GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown
function DM4/12
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    27   3.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   6.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    26   6.9  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.9  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   9.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   9.1  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   9.1  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 197 FLGEIM-KLFFTPSKSPYSDLLPEYLEAQKAGESGGE 232
           + GE M ++ FT ++S  +DL+ EY + Q+AG   G+
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGD 434


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 25  DELAKENIPHSRQKRILWITNDGRLALPPGTTMAITPSLSMPFVRHPP 72
           D +     PHS    I  ++    L     +   +TP L MP   HPP
Sbjct: 263 DYMTDSKAPHSATSLINGVSIVIELIRKNNSDYDVTPVLQMPLDTHPP 310


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 58  AITPSLSMPF----VRHPPKGFLSNMTISFPFSIDFDKLGLTD--NENP 100
           ++ PS   PF    V HPP   LS  T + P S D       D  NENP
Sbjct: 271 SLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMSSDGHLAPAFDFLNENP 319


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 51  LPPGTTMAITPSLSMPFVRHPPKGFLSNMTISFPFSIDFDK 91
           LPP  +  +T  L  P++    + +L N T  F  SI+ ++
Sbjct: 189 LPPNFSGRVTRLLMKPYIMAANRSYLRNHTKRFTDSIELEQ 229


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 243 SIFQSSTNKYTQEAENIHKRQEHDNIEENKIEE 275
           S+F+S+  K TQE E++  R   DN+  N IE+
Sbjct: 75  SMFRSAFPKATQEEEDLEMRWIRDNL--NPIED 105


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 78  NMTISFPFSIDFDKLGLTDNENPYGDFPPILARSMSGAA 116
           N+ I       + KLG   N+ P   FP ++A   +GA+
Sbjct: 5   NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGAS 43


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 156 GERAIMYGIAED-MLSNFG--LSGKECLLRAICEIQSHPLTNFGFLGEIMKL 204
           G     YG+  D  L  F   L   E ++   CE  S+PL N   L  I KL
Sbjct: 341 GSGCYFYGLGNDEQLDEFEKRLESGEKVMALFCEFPSNPLLNSPDLVRIRKL 392


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 204 LFFTPSKSPYSDLLPEYLEAQK 225
           + FT S  PY+D + +YLE  K
Sbjct: 364 ILFTASVQPYADPIIDYLERDK 385


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 207 TPSKSPYSDLLPEYLEAQKAGESGGECW 234
           +P    Y+ LLPEY+     GE G   W
Sbjct: 232 SPQGLKYAALLPEYVAKFSIGEKGLTVW 259


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,179
Number of Sequences: 5004
Number of extensions: 56943
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 9
length of query: 279
length of database: 2,362,478
effective HSP length: 72
effective length of query: 207
effective length of database: 2,002,190
effective search space: 414453330
effective search space used: 414453330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)