GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown
function DM4/12
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    34   0.11 
07_01_0313 + 2216498-2216953                                           29   5.5  
08_01_0268 - 2167639-2167764,2167887-2167937,2169126-2169167,216...    28   9.6  

>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 124 VTRY-LERRRGKRSVHDSVT-PEIERAVLDRLHGGERAIMYGIAEDMLSNFGLSGKECLL 181
           V RY +E RRG    HD V+ P ++    +RL      +   +A+D+     L G+ C+ 
Sbjct: 19  VARYAIEHRRGHGPAHDGVSPPAVDGEEAERLRAENVILRARLADDLSILRELQGEPCVS 78

Query: 182 RAICEIQSH-----PLTNFGFLGEIMKLFFTPSKSPYSDLLPEYLEAQKAGESGGE 232
           +  C    H      + N  FL ++ K+    S+   ++L P+ +      E GG+
Sbjct: 79  QE-CPADLHNRLVAAVNNASFLAQLEKI-RDESRHQQTELSPDNMTDIPYTEGGGK 132


>07_01_0313 + 2216498-2216953
          Length = 151

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)

Query: 48  RLALPPGTTMAITPSLSMPFVRHPPK 73
           ++ALPP   MA  P++ MPF+  PPK
Sbjct: 128 KVALPP---MAAVPNVPMPFLAPPPK 150


>08_01_0268 -
           2167639-2167764,2167887-2167937,2169126-2169167,
           2169343-2169449,2169536-2169604,2170542-2170665
          Length = 172

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 147 RAVLDRLHGGERA---IMYGIAEDMLSNF-GLSGKECLLRAICEIQSHPLTNFGFLGEIM 202
           R V DR+ G  +    + Y   ED      G+ GK CL+      ++   TNF      M
Sbjct: 66  RVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKNCLISLAATGKAETSTNFYHSENKM 125

Query: 203 KLFF 206
           K  F
Sbjct: 126 KRLF 129


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,557
Number of Sequences: 37544
Number of extensions: 359922
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 4
length of query: 279
length of database: 14,793,348
effective HSP length: 81
effective length of query: 198
effective length of database: 11,752,284
effective search space: 2326952232
effective search space used: 2326952232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)