GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown
function DM4/12
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.60 
SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_38826| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.4  
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  30   2.4  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   5.6  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   28   7.4  
SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/34 (50%), Positives = 19/34 (55%)

Query: 179 CLLRAICEIQSHPLTNFGFLGEIMKLFFTPSKSP 212
           CL RAI  I+ H       +GEI  LFFT S SP
Sbjct: 455 CLERAIDTIRDHMDELVAIVGEIFVLFFTDSSSP 488


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 90  DKLGLTDN----ENPYGDFPPILARSMSGAALNMVTDY 123
           D LGL DN     N Y DF   L RS  G   NM+ DY
Sbjct: 79  DILGLADNIGSQANVYSDFKETLKRSPEGKQTNMLADY 116


>SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 71  PPKGFLSNMTISFPFSIDFDKLGLTDNENP 100
           P +  L N+T S PF +D  K  + DNE P
Sbjct: 114 PNEARLRNLTYSAPFYVDITKTRIKDNEEP 143


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 23   PKDELAKENIPHSRQKRILWITNDGRLALPP-----------GTTMAITPSLSMPFVRHP 71
            P D+  ++  P + +KRI++   DG ++ P              T A+   L+     + 
Sbjct: 1434 PADDPKRKYRPTTPEKRIVFAICDGCVSSPDLQVLDVEGLDVQLTSAVVSYLNTRISINT 1493

Query: 72   PKGFLSNMTISFPFSIDFDKLGLTDNENPYGDFPP 106
             KG +    +   +  DF+K  LTD++N  GD PP
Sbjct: 1494 DKGQVVLPELLSWYKKDFEKSPLTDSDNLIGDSPP 1528


>SB_38826| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 505

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 246 QSSTNKYTQEAENIHKRQEH 265
           + S+ KYTQE+E + KRQ H
Sbjct: 94  EESSTKYTQESEELDKRQRH 113


>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 87  IDFDKLGLTDNENPYGDFPPILARSMSGAALNMVTDYVTRYLE 129
           ++  K G+      +  F  ++A S+SG +L++  D+ TRY++
Sbjct: 153 LNLSKFGIDQKTAGWLGFGAVVAGSLSGISLSIFADHFTRYMK 195


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 139 DSVTPEIERAVLDRLHGGERAIMYGIAEDMLSNFG-LSGKECLLRAICEIQSHPLTNFGF 197
           D    +I R VL+R H  +    + +    L+  G L  +E L  A+      PLT+  +
Sbjct: 321 DKAFQKIRRLVLEREH--QNTTTWAVLTSALAAHGKLEAQETLAHALMSSYPRPLTDEEY 378

Query: 198 LGEIMKLFFTPSKSPYSDLLPEYLEAQKAGESGGECWPYYRLCPKSIFQSSTNKYTQEA- 256
              +  +FF P    +  L    L+     ++  E    +   P  I+Q+ TN +  ++ 
Sbjct: 379 EALLEGIFFLPQGPLHKTLFDALLKDAARDDNPHE----HAAMP--IYQNKTNVHHPDSP 432

Query: 257 ENIHKRQEH 265
           E+ H  + H
Sbjct: 433 EHEHCLRRH 441


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 242 KSIFQSSTNKYTQEAENIHKRQEHDNIEENKIE 274
           K I +  T+KY +E +++ + + H  IE+N +E
Sbjct: 758 KKILREVTDKYDKEKKHLLEEKTHCEIEKNDVE 790


>SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 53  PGTTMAITPSLSMPFVRHPPKGFLSNMTISFPFSIDFDKL 92
           P  T+ +   +S+P + H P GF      S PF +    L
Sbjct: 206 PSVTINMALYVSIPSLTHSPLGFAQAQVYSIPFGMTIQNL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,490,473
Number of Sequences: 59808
Number of extensions: 395094
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 10
length of query: 279
length of database: 16,821,457
effective HSP length: 81
effective length of query: 198
effective length of database: 11,977,009
effective search space: 2371447782
effective search space used: 2371447782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)