BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown function DM4/12 (279 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human a... 33 0.17 U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 30 1.6 U67949-10|AAM69109.1| 159|Caenorhabditis elegans Hypothetical p... 30 2.1 U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical pr... 30 2.1 U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical pr... 30 2.1 Z83105-4|CAB05486.1| 280|Caenorhabditis elegans Hypothetical pr... 29 2.8 AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ... 28 6.4 >U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human autophagy) homologprotein 1 protein. Length = 375 Score = 33.5 bits (73), Expect = 0.17 Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 215 DLLPEYLEAQKAGESGGECWPYYRLCPKSIFQSSTNKYTQEAENIHKRQEHDNIEENKIE 274 DL + A+ A E GE W YR + +F+ ++ EAE + +H + + + Sbjct: 140 DLQTKRRTAEAASEKSGELWKKYRDNLRQVFEDQDELHSLEAERQYAEVQHRKLTDTNVL 199 Query: 275 EI 276 ++ Sbjct: 200 DL 201 >U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex protein protein10, isoform b protein. Length = 1189 Score = 30.3 bits (65), Expect = 1.6 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 80 TISFPFSID-FDKLGLTDNENPYGDFPPILARSMSGAALNMVTDYVTRYLERRRGKRSVH 138 T S+ F +D F K GL D++ P PP A S + + R + + ++ VH Sbjct: 420 TGSWVFRVDHFSKYGLADDDEPMDGSPPQQALQASSPLQVIDMNTSARDVNNQVQRKKVH 479 Query: 139 DSVTPEIERAVLDRL 153 + + +L+R+ Sbjct: 480 KATDAHHQEIILERV 494 >U67949-10|AAM69109.1| 159|Caenorhabditis elegans Hypothetical protein F55A4.8c protein. Length = 159 Score = 29.9 bits (64), Expect = 2.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 148 AVLDRLHGGERAIMYGIAEDMLSNF 172 A++DRLH GE +++G +LS F Sbjct: 18 AIMDRLHNGENLLLFGSIATLLSMF 42 >U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical protein F55A4.8b protein. Length = 486 Score = 29.9 bits (64), Expect = 2.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 148 AVLDRLHGGERAIMYGIAEDMLSNF 172 A++DRLH GE +++G +LS F Sbjct: 345 AIMDRLHNGENLLLFGSIATLLSMF 369 >U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical protein F55A4.8a protein. Length = 626 Score = 29.9 bits (64), Expect = 2.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 148 AVLDRLHGGERAIMYGIAEDMLSNF 172 A++DRLH GE +++G +LS F Sbjct: 485 AIMDRLHNGENLLLFGSIATLLSMF 509 >Z83105-4|CAB05486.1| 280|Caenorhabditis elegans Hypothetical protein F14H3.4 protein. Length = 280 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 245 FQSSTNKYTQEAENIHKRQEHDNIEENKIEEIQ 277 FQS TNK + ++N K E I +N EE++ Sbjct: 33 FQSFTNKMSDPSKNSEKVPEEQEIRDNSEEELE 65 >AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical protein K09F6.6 protein. Length = 1010 Score = 28.3 bits (60), Expect = 6.4 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 188 QSHPLTNFGFLGEIMKLFFTPSKSPYSDL--LPEYLEAQKAGESGGECWPYYRLCPKSIF 245 Q L N G L + +++ S S + P+YL +K E+ E WP + + Sbjct: 201 QMKDLLNSGALDKKLEISALSQPSLCSSISETPKYLHTKKESENKSEIWPVFLATNDVVS 260 Query: 246 QSSTNK 251 +S+N+ Sbjct: 261 DASSNE 266 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.318 0.136 0.406 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,066,719 Number of Sequences: 27539 Number of extensions: 300568 Number of successful extensions: 598 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 593 Number of HSP's gapped (non-prelim): 7 length of query: 279 length of database: 12,573,161 effective HSP length: 80 effective length of query: 199 effective length of database: 10,370,041 effective search space: 2063638159 effective search space used: 2063638159 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 59 (27.9 bits)
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