GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown
function DM4/12
         (279 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42843-5|AAA83597.2|  375|Caenorhabditis elegans Beclin (human a...    33   0.17 
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    30   1.6  
U67949-10|AAM69109.1|  159|Caenorhabditis elegans Hypothetical p...    30   2.1  
U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z83105-4|CAB05486.1|  280|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U42843-5|AAA83597.2|  375|Caenorhabditis elegans Beclin (human
           autophagy) homologprotein 1 protein.
          Length = 375

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 215 DLLPEYLEAQKAGESGGECWPYYRLCPKSIFQSSTNKYTQEAENIHKRQEHDNIEENKIE 274
           DL  +   A+ A E  GE W  YR   + +F+     ++ EAE  +   +H  + +  + 
Sbjct: 140 DLQTKRRTAEAASEKSGELWKKYRDNLRQVFEDQDELHSLEAERQYAEVQHRKLTDTNVL 199

Query: 275 EI 276
           ++
Sbjct: 200 DL 201


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform b protein.
          Length = 1189

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 80  TISFPFSID-FDKLGLTDNENPYGDFPPILARSMSGAALNMVTDYVTRYLERRRGKRSVH 138
           T S+ F +D F K GL D++ P    PP  A   S     +  +   R +  +  ++ VH
Sbjct: 420 TGSWVFRVDHFSKYGLADDDEPMDGSPPQQALQASSPLQVIDMNTSARDVNNQVQRKKVH 479

Query: 139 DSVTPEIERAVLDRL 153
            +     +  +L+R+
Sbjct: 480 KATDAHHQEIILERV 494


>U67949-10|AAM69109.1|  159|Caenorhabditis elegans Hypothetical
           protein F55A4.8c protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 148 AVLDRLHGGERAIMYGIAEDMLSNF 172
           A++DRLH GE  +++G    +LS F
Sbjct: 18  AIMDRLHNGENLLLFGSIATLLSMF 42


>U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical
           protein F55A4.8b protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 148 AVLDRLHGGERAIMYGIAEDMLSNF 172
           A++DRLH GE  +++G    +LS F
Sbjct: 345 AIMDRLHNGENLLLFGSIATLLSMF 369


>U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical
           protein F55A4.8a protein.
          Length = 626

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 148 AVLDRLHGGERAIMYGIAEDMLSNF 172
           A++DRLH GE  +++G    +LS F
Sbjct: 485 AIMDRLHNGENLLLFGSIATLLSMF 509


>Z83105-4|CAB05486.1|  280|Caenorhabditis elegans Hypothetical
           protein F14H3.4 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 245 FQSSTNKYTQEAENIHKRQEHDNIEENKIEEIQ 277
           FQS TNK +  ++N  K  E   I +N  EE++
Sbjct: 33  FQSFTNKMSDPSKNSEKVPEEQEIRDNSEEELE 65


>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
           protein K09F6.6 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 188 QSHPLTNFGFLGEIMKLFFTPSKSPYSDL--LPEYLEAQKAGESGGECWPYYRLCPKSIF 245
           Q   L N G L + +++      S  S +   P+YL  +K  E+  E WP +      + 
Sbjct: 201 QMKDLLNSGALDKKLEISALSQPSLCSSISETPKYLHTKKESENKSEIWPVFLATNDVVS 260

Query: 246 QSSTNK 251
            +S+N+
Sbjct: 261 DASSNE 266


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,066,719
Number of Sequences: 27539
Number of extensions: 300568
Number of successful extensions: 598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 7
length of query: 279
length of database: 12,573,161
effective HSP length: 80
effective length of query: 199
effective length of database: 10,370,041
effective search space: 2063638159
effective search space used: 2063638159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)