GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown
function DM4/12
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16270.1 68414.m01948 protein kinase family protein contains ...    33   0.28 
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.0  
At3g16710.1 68416.m02134 pentatricopeptide (PPR) repeat-containi...    28   8.0  
At1g66750.1 68414.m07587 cell division protein kinase, putative ...    28   8.0  

>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 50  ALPPGTTMAITPSLSMPFVRHPPKGFLSNMTISFPFSIDFDKLGL 94
           A+PP  T+   PS       H P+  L N T+ +P SI     GL
Sbjct: 373 AVPPNATLQYAPSNPPSSSVHYPQSILPNSTLQYPQSISSSSYGL 417


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 82  SFPFSIDFDKLGLTDNENPYGDFPPILARSMS------GAALNMVTD----YVTRYLERR 131
           SFP  ++F KL +T   N  GD+  I+   +       G  +N   D    YV  Y E R
Sbjct: 185 SFPDRVEFTKLQVTVKTNFSGDWKEIMDEQVDADDTSYGVIVNTFQDLESAYVKNYTEAR 244

Query: 132 RGK 134
            GK
Sbjct: 245 AGK 247


>At3g16710.1 68416.m02134 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 434

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 180 LLRAICEIQSHPLTNFGFLGEIMKLFFTPSKSPYSDLLPEY 220
           ++  +C + S P     FLG++MKL F P    ++ LL  Y
Sbjct: 51  VMHCVC-LSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGY 90


>At1g66750.1 68414.m07587 cell division protein kinase, putative
           similar to cell division protein kinase 7 [Homo sapiens]
           SWISS-PROT:P50613
          Length = 348

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 193 TNFGFLGEIMKLFFTPSKSPYSDL--LPEYLE 222
           T    LG+I + F TP  S +SD+  LP+Y+E
Sbjct: 215 TEIDQLGKIFQAFGTPVPSQWSDMIYLPDYME 246


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,824,769
Number of Sequences: 28952
Number of extensions: 296820
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 4
length of query: 279
length of database: 12,070,560
effective HSP length: 80
effective length of query: 199
effective length of database: 9,754,400
effective search space: 1941125600
effective search space used: 1941125600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)