BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown function DM4/12 (279 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g16270.1 68414.m01948 protein kinase family protein contains ... 33 0.28 At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.0 At3g16710.1 68416.m02134 pentatricopeptide (PPR) repeat-containi... 28 8.0 At1g66750.1 68414.m07587 cell division protein kinase, putative ... 28 8.0 >At1g16270.1 68414.m01948 protein kinase family protein contains PF|00069 Eukaryotic protein kinase domain. ESTs gb|H37741, gb|T43005 and gb|AI100340 come from this gene Length = 1147 Score = 32.7 bits (71), Expect = 0.28 Identities = 16/45 (35%), Positives = 21/45 (46%) Query: 50 ALPPGTTMAITPSLSMPFVRHPPKGFLSNMTISFPFSIDFDKLGL 94 A+PP T+ PS H P+ L N T+ +P SI GL Sbjct: 373 AVPPNATLQYAPSNPPSSSVHYPQSILPNSTLQYPQSISSSSYGL 417 >At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 496 Score = 28.3 bits (60), Expect = 6.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%) Query: 82 SFPFSIDFDKLGLTDNENPYGDFPPILARSMS------GAALNMVTD----YVTRYLERR 131 SFP ++F KL +T N GD+ I+ + G +N D YV Y E R Sbjct: 185 SFPDRVEFTKLQVTVKTNFSGDWKEIMDEQVDADDTSYGVIVNTFQDLESAYVKNYTEAR 244 Query: 132 RGK 134 GK Sbjct: 245 AGK 247 >At3g16710.1 68416.m02134 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 434 Score = 27.9 bits (59), Expect = 8.0 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 180 LLRAICEIQSHPLTNFGFLGEIMKLFFTPSKSPYSDLLPEY 220 ++ +C + S P FLG++MKL F P ++ LL Y Sbjct: 51 VMHCVC-LSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGY 90 >At1g66750.1 68414.m07587 cell division protein kinase, putative similar to cell division protein kinase 7 [Homo sapiens] SWISS-PROT:P50613 Length = 348 Score = 27.9 bits (59), Expect = 8.0 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Query: 193 TNFGFLGEIMKLFFTPSKSPYSDL--LPEYLE 222 T LG+I + F TP S +SD+ LP+Y+E Sbjct: 215 TEIDQLGKIFQAFGTPVPSQWSDMIYLPDYME 246 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.136 0.406 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,824,769 Number of Sequences: 28952 Number of extensions: 296820 Number of successful extensions: 676 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 675 Number of HSP's gapped (non-prelim): 4 length of query: 279 length of database: 12,070,560 effective HSP length: 80 effective length of query: 199 effective length of database: 9,754,400 effective search space: 1941125600 effective search space used: 1941125600 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 59 (27.9 bits)
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