Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001903-TA|BGIBMGA001903-PA|IPR005225|Small GTP-binding
protein domain, IPR013753|Ras, IPR001806|Ras GTPase,
IPR006688|ADP-ribosylation factor, IPR003577|Ras small GTPase, Ras
type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR002041|GTP-binding nuclear protein Ran
         (208 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   4.8  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   4.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 154 YVPEIMFVMETSAKDNTNVEDT 175
           YVPE   V++    +  NVE+T
Sbjct: 284 YVPEFKGVLDVKDVEEGNVEET 305


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 154 YVPEIMFVMETSAKDNTNVEDT 175
           YVPE   V++    +  NVE+T
Sbjct: 199 YVPEFKGVLDVKDVEEGNVEET 220


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 154 YVPEIMFVMETSAKDNTNVEDT 175
           YVPE   V++    +  NVE+T
Sbjct: 518 YVPEFKGVLDVKDVEEGNVEET 539


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 55   VDFSMKTLLVDGKKVKLQIWDTAGQERFRTITQSYYRSANG 95
            VDFS +    DGK+  LQI +     ++  + Q++ +  +G
Sbjct: 1030 VDFSKE----DGKEHHLQIMNLKTYTQYSVVVQAFNKVGSG 1066


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 154 YVPEIMFVMETSAKDNTNVE 173
           Y+P +  V+ET  K+ T+ E
Sbjct: 104 YIPRVESVVETCKKEVTSTE 123


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 154 YVPEIMFVMETSAKDNTNVE 173
           Y+P +  V+ET  K+ T+ E
Sbjct: 78  YIPRVESVVETCKKEVTSTE 97


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/34 (17%), Positives = 18/34 (52%)

Query: 111 LQKWIEEVRRYTSSNVIVSLIGNKCDLTEQREVE 144
           L++W + +     +  +++  G +  LTE+  ++
Sbjct: 310 LERWRDRIYEAIHTGSVINTRGERIQLTEKNGID 343


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,313
Number of Sequences: 429
Number of extensions: 2243
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 208
length of database: 140,377
effective HSP length: 55
effective length of query: 153
effective length of database: 116,782
effective search space: 17867646
effective search space used: 17867646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)