GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001903-TA|BGIBMGA001903-PA|IPR005225|Small GTP-binding
protein domain, IPR013753|Ras, IPR001806|Ras GTPase,
IPR006688|ADP-ribosylation factor, IPR003577|Ras small GTPase, Ras
type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR002041|GTP-binding nuclear protein Ran
         (208 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.1  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    21   7.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 60  KTLLVDGKKVKLQIWDTA--GQERFRTITQSYYRSANGVIIV 99
           + L+VDGKK + QI D      ++   +  S  R    +II+
Sbjct: 499 RKLIVDGKKSEEQIVDICIRSHDKLCDVCDSVNRIFGFIIII 540


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 76  TAGQERFRTITQSYYRSANGVIIVYDITKRS 106
           T GQ+   T   +  + +N +I +YD+ + +
Sbjct: 68  TLGQDLITTGGYTLPKESNAIIHIYDVHRNA 98


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,527
Number of Sequences: 317
Number of extensions: 1811
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 208
length of database: 114,650
effective HSP length: 54
effective length of query: 154
effective length of database: 97,532
effective search space: 15019928
effective search space used: 15019928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)