Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001903-TA|BGIBMGA001903-PA|IPR005225|Small GTP-binding
protein domain, IPR013753|Ras, IPR001806|Ras GTPase,
IPR006688|ADP-ribosylation factor, IPR003577|Ras small GTPase, Ras
type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR002041|GTP-binding nuclear protein Ran
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 180 1e-46
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 175 5e-45
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 172 4e-44
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 151 7e-38
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 143 1e-35
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 131 6e-32
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 121 7e-29
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 117 1e-27
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 101 8e-23
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 93 4e-20
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 81 1e-16
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 77 1e-15
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 75 6e-15
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 75 8e-15
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 73 2e-14
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 70 3e-13
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 66 4e-12
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 55 9e-09
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 52 8e-08
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 50 3e-07
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 5e-06
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 33 0.040
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 31 0.093
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 31 0.16
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.65
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 28 1.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.6
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 27 2.6
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 26 3.5
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 6.1
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 25 8.1
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 180 bits (439), Expect = 1e-46
Identities = 83/169 (49%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 16 QFDYLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWD 75
++DYLFK++LIGD G GK+C++ R + E + +TIGVDF ++T ++GK VKLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWD 63
Query: 76 TAGQERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKC 135
TAGQERFRTIT SYYR A+G+IIVYD+T + +F ++++W++E+ RY V L+GNK
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKS 123
Query: 136 DLTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELK 184
D+ +++ VE K F + I F +ETSAKD+TNVE F +++ ++K
Sbjct: 124 DMVDKKVVEYSVAKEFADSL-NIPF-LETSAKDSTNVEQAFLTMSRQIK 170
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 175 bits (425), Expect = 5e-45
Identities = 78/170 (45%), Positives = 120/170 (70%), Gaps = 2/170 (1%)
Query: 14 DDQFDYLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQI 73
+D++DYLFK VLIGD G GK+ ++ R F +TIGV+F+ + +++D KK+K QI
Sbjct: 4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQI 63
Query: 74 WDTAGQERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGN 133
WDTAGQER+R IT +YYR A G +IVYDITK+S+F ++ +W++E+R + SN+++ L+GN
Sbjct: 64 WDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGN 123
Query: 134 KCDLTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATEL 183
K DL R V ++E ++F + +ETSA D +NVE+ F+++ TE+
Sbjct: 124 KTDLLHLRAVSTEEAQAFA--AENNLSFIETSAMDASNVEEAFQTVLTEI 171
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 172 bits (418), Expect = 4e-44
Identities = 77/168 (45%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 17 FDYLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDT 76
+DYL K++LIGD G GK+C++ R +F TIG+DF ++T+ +DGK++KLQIWDT
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65
Query: 77 AGQERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKCD 136
AGQERFRTIT +YYR A G++++YD+T + +F +++ W V ++ S NV LIGNKCD
Sbjct: 66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125
Query: 137 LTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELK 184
+QR+V ++ ++ + + F +E SAK N NV++ F +LA E+K
Sbjct: 126 CEDQRQVSFEQGQALADEL-GVKF-LEASAKTNVNVDEAFFTLAREIK 171
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 151 bits (366), Expect = 7e-38
Identities = 69/173 (39%), Positives = 109/173 (63%), Gaps = 5/173 (2%)
Query: 15 DQFDYLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLV----DGKKVK 70
+ +DYL KIVL G GTGK+C++QR + ++ +T+G+DF+ + + V K++K
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 71 LQIWDTAGQERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSL 130
LQIWDTAGQE+FR++ ++YYR A G ++VYD+T + +F L W+ ++R S + V L
Sbjct: 64 LQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVL 123
Query: 131 IGNKCDLTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATEL 183
G+K DL QR+V ++E FC I ETS+ +NVE+ F S+ + +
Sbjct: 124 AGSKSDLQNQRQVSTEEAAEFCS-EKHISSAHETSSYTGSNVEECFLSVVSTI 175
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 143 bits (347), Expect = 1e-35
Identities = 71/163 (43%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Query: 21 FKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQE 80
FK+V +G+ GKT ++ R F + TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 81 RFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKCDLTEQ 140
RFR++ SY R ++ IIVYDIT ++F++ +KWIE+VR +VI+ L+GNK DL ++
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 141 REVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATEL 183
R+V +E + + + +IM METSAK NV+ FR +A L
Sbjct: 132 RQVTQEEGEKKAKEL-KIMH-METSAKAGHNVKLLFRKIAQML 172
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 131 bits (317), Expect = 6e-32
Identities = 67/170 (39%), Positives = 105/170 (61%), Gaps = 4/170 (2%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVD-GKKVKLQIWDTAGQE 80
K+VL+GD GK+ +V R F + +TIG F +TL +D VKL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 81 RFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKCDLT-E 139
R++++ YYR+AN I+VYDIT+ ++ + WI+E++R ++++L GNK DL E
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 140 QREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELKVEFKI 189
+R VE + +++ + F ETSAK NV + F ++A +L +E K+
Sbjct: 136 RRAVEKADAEAYAAEANLLFF--ETSAKTAENVNELFTAIAKKLPLEDKL 183
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 121 bits (292), Expect = 7e-29
Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 19 YLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAG 78
+L K++++G+ G GKT I+ + + F + + TIG DF K +LVD K V LQ+WDTAG
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 79 QERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEE-VRRYTSSN---VIVSLIGNK 134
QERF+++ ++YR A+ ++VYD+ +F +L W +E + + + SN L+GNK
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNK 126
Query: 135 CDLTEQ-REVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLA 180
D+ EQ R V + +FC+ EI + ETSAK+ NV++ F ++A
Sbjct: 127 VDVEEQKRMVSKSKALAFCQARGEIPY-FETSAKEAINVQEAFETVA 172
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 117 bits (282), Expect = 1e-27
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
K+V++GD G GKTC++ + + F + TIG DF K ++VD K V LQ+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIV---SLIGNKCDL- 137
F+++ ++YR A+ +IVY++ +F S++ W +E TS + ++GN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 138 TEQREVESDEPKSFCRYV-PEIMFVMETSAKDNTNVEDTFRSLA 180
+R V +C+ M E SAK+NTNV D F +++
Sbjct: 130 ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVS 173
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 101 bits (242), Expect = 8e-23
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 21 FKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQE 80
+K+V++GD G GK+ + +L +F++ + TI D K +DG+ L + DTAGQE
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIE-DSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 81 RFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVI-VSLIGNKCDLTE 139
+ + + Y R+ G ++VY+IT RS+F + + +++ R + V L+ NKCDL
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEA 127
Query: 140 QREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELK 184
+R V E + + + ++V ETSAK NVE+ F SL ++
Sbjct: 128 ERVVSRAEGEQLAKSM-HCLYV-ETSAKLRLNVEEAFYSLVRTIR 170
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 92.7 bits (220), Expect = 4e-20
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 21 FKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQE 80
FK+VL+GD GTGKT V+R +G F +++ T+GV+ + ++ +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 81 RFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKCDLTEQ 140
+ + YY II++D+T R T+ ++ W ++ R N+ + L GNK D+ E
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVKE- 127
Query: 141 REVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATEL 183
R+V++ K+ + + + + SAK N N E F LA +L
Sbjct: 128 RKVKA---KAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 81.0 bits (191), Expect = 1e-16
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
K+ +IGD GKT ++ G+F E T+GV+F KT+ + ++ IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKCD--LTE 139
F + A ++ ++D++++ST S+++W + R + + V + LIG K D +T
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPI-LIGTKYDHFMTF 130
Query: 140 QREVESDEPKSFCRYVPEI-MFVMETSAKDNTNVEDTFR 177
RE + + K RY + ++ S + NV+ F+
Sbjct: 131 PREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFK 169
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 77.4 bits (182), Expect = 1e-15
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
K+V++GD GKTC++ G F E + T+ ++ + + VDG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQ-KWIEEVRRYTSSNVIVSLIGNKCDL--- 137
+ + Y ++ V+I + + + ++Q KWI EV + SN+ + L+G K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHF-CSNLPILLVGCKVDLRND 125
Query: 138 ---------TEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELKVEFK 188
T Q+ + +E + + + + +E SAK N V + F + A ++FK
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKY-LECSAKLNEGVNEVFETAARASMLKFK 184
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 75.4 bits (177), Expect = 6e-15
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMK-TLLVDGKKVKLQIWDTAGQE 80
K+V++GD G GKTC++ SG F ER+ T+ ++ T + K ++L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 81 RFRTITQSYYRSANGVIIVYDITKRSTFLSL-QKWIEEVRRYTSSNVIVSLIGNKCDLTE 139
+ + Y ++N +++ + I ++ ++ +KW EV+ + IV L+G K DL +
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIV-LVGLKADLRK 134
Query: 140 QR---EVESDEPKSFCRY--VPEIMFVM-----ETSAKDNTNVEDTFRSLATELKVEFKI 189
R EV + + Y + M E SAK+NT V + F+ LA L ++
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQ-LAVGLTIKKSF 193
Query: 190 IF 191
F
Sbjct: 194 SF 195
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 74.9 bits (176), Expect = 8e-15
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
K+V++GD GKTC++ G F E + T+ ++ + + VDG+ V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQ-KWIEEVRRYTSSNVIVSLIGNKCDL--- 137
+ + Y ++ ++I + + + ++Q KWI EV + SS I+ L+ K DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPIL-LVACKADLRND 125
Query: 138 ---------TEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELKVEFK 188
T Q V ++E ++ + + + +E SAK N V + F S ++ K
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKY-LECSAKTNEGVREVFESATRAAMLKHK 184
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 73.3 bits (172), Expect = 2e-14
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
+I ++G GK+ + + +F+E + TI FS K + G++ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSN-VIVSLIGNKCDLTEQ 140
+ + + +G ++VY IT +S+F ++ +++ +T + V + ++GNK DL Q
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 141 REVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELK 184
R V ++E K+ E SA+ N NV F + +E++
Sbjct: 127 RAVTAEEGKALANEWK--CAWTEASARHNENVARAFELIISEIE 168
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 69.7 bits (163), Expect = 3e-13
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
KIV++GD GKT ++ G F + + TI ++ + + VDG ++L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLS-LQKWIEEVRRYTSSNVIVSLIGNKCDLTEQ 140
+ + Y + ++I + + R + + + KW+ EV V + L+ KCDL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSS-NCPGVKLVLVALKCDLRGA 132
Query: 141 REVESDEPK--------SFCRYVPEIMFVMETSAKDNTNVEDTFRSLA 180
E + D K + + + + + +E SAK N V + F A
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRY-LECSAKLNRGVNEAFTEAA 179
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 66.1 bits (154), Expect = 4e-12
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
K+V++GD GKT ++ G F + T+ ++ + VDGK V+L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQ-KWIEEVRRYTSSNVIVSLIGNKCDL 137
+ + Y A+ +++ + I + ++ KWIEE+ NV L+G K DL
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINT-LCPNVPFILVGMKADL 124
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 54.8 bits (126), Expect = 9e-09
Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
K V++GD GKTC++ + F + T+ ++++ T+++ + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSL-QKWIEEVRRYTSSNVIVSLIGNKCDLTEQ 140
+ + Y + ++ + +T ++F ++ +KW EV + V ++G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHH-CPGVPCLIVGTQIDLRDD 122
Query: 141 REVE 144
V+
Sbjct: 123 PSVQ 126
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 51.6 bits (118), Expect = 8e-08
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
+I+++G GKT I+ +LK G + TIG F+++T V+ + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVET--VEYRNISFTVWDVGGQDK 73
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTS-SNVIVSLIGNKCDL 137
R + + Y+++ G+I V D R + ++ + + ++ + NK DL
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 49.6 bits (113), Expect = 3e-07
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
+++L+G GKT I++ L + + + T G F ++TL V+G ++ IWD GQ+
Sbjct: 18 RVLLLGLDNAGKTTILKCLLNED-VNEVSPTFG--FQIRTLEVEG--LRFTIWDIGGQKT 72
Query: 82 FRTITQSYYRSANGVIIVY----DITKRSTFLSLQK-WIEEVRRYTSSNVIVSLIGNKCD 136
R ++Y+ S +I V D+ +LQ+ +EE +TS + ++ NK D
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTS----ILVLANKSD 128
Query: 137 LTEQREVES-DEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELKVEFKI 189
++ E + + +Y + SA N++D LA +LK E K+
Sbjct: 129 VSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK-EIKL 181
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 45.6 bits (103), Expect = 5e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
+I+++G GKT I+ +LK + T+G F+++T V K +K +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLKLNQSVVTIP-TVG--FNVET--VTYKNIKFNVWDVGGQDK 77
Query: 82 FRTITQSYYRSANGVIIVYD 101
R + + Y+ G+I V D
Sbjct: 78 IRPLWRHYFTGTKGLIFVVD 97
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 32.7 bits (71), Expect = 0.040
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIG--VDFSMKTLLVDGKKVKLQIWDTAGQ 79
K++L+G G+GK+ + + + N++ + +G +D + G V L +WD GQ
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 80 ERFRTITQS-----YYRSANGVIIVYDITKR 105
E F S +R+ +I V+D+ R
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESR 92
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 31.5 bits (68), Expect = 0.093
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWD 75
K VL+ D T K C VQR G+ I N +DFS LLV G + K+ ++D
Sbjct: 274 KSVLVYDLRTKKEC-VQRFYHGSSICSMQN---LDFSQPKLLVSGLESKISLYD 323
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 30.7 bits (66), Expect = 0.16
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 16 QFDYLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWD 75
++DYL I+ GD G G ++ F+E I +D L + K+
Sbjct: 158 KYDYLLPIIADGDMGFGSVTSTMKMTK-RFVESGVAMIHLD----DLAIGLKRF------ 206
Query: 76 TAGQERFRTITQSYYRSANGVIIVYDITKRSTFL 109
T GQ R T Y R V + +DI K T L
Sbjct: 207 TVGQGRTVVPTSEYLRRLTAVRLQFDIMKAETML 240
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 0.65
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 4 RNPNTLMSVPDDQFDYLFKIVLIGDCGTGKTCIVQRLKSG---NFIERHGNTIGVDFSMK 60
+N + L+++ F+Y +IGD T +++ + NF+ G IG++F
Sbjct: 308 KNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRES 367
Query: 61 TLLVDGKKVKL 71
+LLV+ K ++
Sbjct: 368 SLLVNAKNPRV 378
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 24 VLIGDCGTGKTCIVQRL 40
+L+GD TGKTCI++ L
Sbjct: 1873 ILVGDTATGKTCILRLL 1889
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 23 IVLIGDCGTGKTCIVQRL 40
++L+G+ GTGKT +Q L
Sbjct: 470 LLLVGETGTGKTTTIQLL 487
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 1.1
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 22 KIVLIGDCGTGKTC--IVQRLKSGNFIERHGNTIGVDFSMKTL-------LVDGKKVKLQ 72
K +L CG G T I++ K+ N VD+S K + L D K
Sbjct: 119 KSILEIGCGAGNTIWPILKENKNSNL-----KIFAVDYSEKAIDVVKQNPLYDAKFCSAS 173
Query: 73 IWDTAGQERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTS-SNVIVSLI 131
+WD AG + R+I ++ S + + +++ + S Q+ IE + R +I+
Sbjct: 174 VWDLAGSDLLRSIEEA---SIDAITLIFCFSALSPD-QWQQAIENLYRLLKPGGLILFRD 229
Query: 132 GNKCDLTEQR 141
+ DLT+ R
Sbjct: 230 YGRLDLTQLR 239
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.6
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 22 KIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQER 81
++V+ GD G GK+ ++ L + + + S+ + V L + DT
Sbjct: 5 RVVICGDQGVGKSSLISALIQEDNVTSIPKVFPI-ISIPSNPDSNDDVSLVLVDTQSDSN 63
Query: 82 FRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKC-DLTEQ 140
R + + AN + +VY +S+ W+ R NV + L NK DL
Sbjct: 64 EREYLAAEIKKANVICLVYSDNYSYERVSI-FWLPYFRS-LGVNVPIVLCENKSEDLDNY 121
Query: 141 REVESDEPK--SFCRYVPEIMFVMETSAKDNTNVEDTF 176
+ + + E + EI + SA + NV + F
Sbjct: 122 QGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELF 159
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 119 RRYTSSNVIVSLIGNKCDLTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRS 178
R Y S + +SL + E E+ +P S + ++ V++ T VE T+ S
Sbjct: 252 RDYVSYDTTISLKNDDSSSLGDMEFETSQPSSSISEIIHLLAVLDKRIPKKTLVEKTYAS 311
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 23 IVLIGDCGTGKTCIVQRL-------KSGNFIERHGNTIG----VDFSMKTLLVDGKKVKL 71
++++GD G G+T + L + NF +++ V + +L DG K+ L
Sbjct: 55 LMVVGDVGLGRTAFINTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQTDIILEDGTKINL 114
Query: 72 QIWDT 76
+ DT
Sbjct: 115 TVLDT 119
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 133 NKCDLTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATEL 183
NK DLT + ++ + P ++ ++PEI+ +T+ N R L+ E+
Sbjct: 116 NKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEI 166
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 44 NFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIVYDIT 103
N ++ GN +DF+ + L + +K+K DT +E R + + + NG I V ++T
Sbjct: 55 NEVDADGNGT-IDFT-EFLTMMARKMK----DTDNEEEVREAFKVFDKDGNGYITVEELT 108
Query: 104 KRSTFLSLQKWIEEV 118
T L + EEV
Sbjct: 109 HVLTSLGERLSQEEV 123
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.137 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 925,870
Number of Sequences: 5004
Number of extensions: 35951
Number of successful extensions: 158
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 36
length of query: 208
length of database: 2,362,478
effective HSP length: 70
effective length of query: 138
effective length of database: 2,012,198
effective search space: 277683324
effective search space used: 277683324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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