GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001902-TA|BGIBMGA001902-PA|IPR005331|Chondroitin
4-O-sulfotransferase
         (256 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    24   1.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   9.2  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 43  VIWCNIFKAASTSWMY 58
           +I CNIF+AA+ S +Y
Sbjct: 119 IILCNIFEAAAKSLIY 134


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 116  SAYNDKIVHAWPKSFHDKMGRMIIKKYRKSQNKPVPTERYPVFEEFVSYVLDE 168
            S+ N  I     KS      RM I   R SQ +P    RYP  +   ++V DE
Sbjct: 1405 SSNNPSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPNGKANENFVFDE 1457


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 116  SAYNDKIVHAWPKSFHDKMGRMIIKKYRKSQNKPVPTERYPVFEEFVSYVLDE 168
            S+ N  I     KS      RM I   R SQ +P    RYP  +   ++V DE
Sbjct: 1405 SSNNPSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPNGKANENFVFDE 1457


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 183 TDFCTPCRFAFDVILKFETLDEDQRYLIQLARLQDVVKPEWR 224
           TD     ++   +I  +  +DE+   L  L    DV+K  +R
Sbjct: 46  TDLEPALQYCTHLIYGYAAIDEETYKLTPLNEQFDVIKDNYR 87


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,763
Number of Sequences: 317
Number of extensions: 2763
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 114,650
effective HSP length: 55
effective length of query: 201
effective length of database: 97,215
effective search space: 19540215
effective search space used: 19540215
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)