GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001902-TA|BGIBMGA001902-PA|IPR005331|Chondroitin
4-O-sulfotransferase
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    30   0.38 
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    30   0.38 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   2.7  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   4.7  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   8.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   8.2  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 198 KFETLDEDQRYLIQLARLQDVVKPEWRNSGKGTNTLHNINHLYSRLK 244
           +FE  DE  R  +  A  +D+  P WR   K + TL N +  +S+++
Sbjct: 207 RFEREDESSRQKLSAAMNEDI--PPWRQPSKNSQTLSNGDLQHSKVQ 251


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 130 FHDKMGRMIIKKYRKSQNKPVPTERYPVFEEFVSYVLDE-TRARRSLDMHWTP 181
           FH     +  K   +  N  VP + Y  FEE++  +L++    + +L  HWTP
Sbjct: 142 FHLDGKNLRAKGLNRIGNLIVPNDNYCRFEEWIFPILNKMVEEQETLGTHWTP 194


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 96  KAQPDSITFLIVRHPLERLASAYNDKIVHAW 126
           +A  + IT L   HP   LA+A  DK V  W
Sbjct: 329 QAHSEYITSLDFSHPFGTLATASTDKTVKVW 359


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 69  AFLDKTKEVPLVLARRKYARPTIEMIKKAQPDSITFLIVRHPLERLASAYNDKIVHAWPK 128
           AFL+   E  L L++ + A+ TI ++    PD+  +    + L+R A  Y D        
Sbjct: 223 AFLETRAEYELYLSKMEEAKSTIYLLLDRNPDNHQYY---YNLQR-AYGYEDASGKVLDS 278

Query: 129 SFHDKMGRMIIKKYRKSQ-NKPVPTERYPVFEEFVSYV 165
           +    +   + K+Y KS+    +P E+    +EF+++V
Sbjct: 279 AEWLNLYSQLAKRYPKSECPTRLPLEKLE-GDEFLTHV 315


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 104 FLIVRHPLERLASAYNDKIVH 124
           FLIV HP   L  A++D I++
Sbjct: 132 FLIVHHPYTSLEQAFHDGIIN 152


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 47  NIFKAASTSWMYNFN---LMANYSAAFLDKTKEVPLVLARRKYARPTIEMIKKAQPDSIT 103
           +IF   S +W+  ++   ++   S+AFL+      L      YA            + + 
Sbjct: 168 SIFHRLSVAWVGEYSSVTMLVPDSSAFLNVYTNTELAYLYSMYAA-----------EDVK 216

Query: 104 FLIVRHPLERLASAYNDKIVHAWPKSFHDKMGRMIIKKYRKSQNK 148
            LI +H L      Y + ++   PK+FH K G  I  K+ K Q K
Sbjct: 217 TLIHQHILVN-QRVYAEDVIE--PKTFHYKNGISISMKFDKDQKK 258


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,071
Number of Sequences: 5004
Number of extensions: 51177
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 6
length of query: 256
length of database: 2,362,478
effective HSP length: 71
effective length of query: 185
effective length of database: 2,007,194
effective search space: 371330890
effective search space used: 371330890
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)