Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001902-TA|BGIBMGA001902-PA|IPR005331|Chondroitin
4-O-sulfotransferase
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 31 1.2
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 29 2.8
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 29 3.7
08_02_1140 + 24649869-24651029 29 4.9
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 29 4.9
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 29 4.9
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 29 4.9
02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077... 28 6.5
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886... 28 8.5
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 157 VFEEFVSYVLDETRARRSLDMHWTPY-TDFCTP 188
++ +FVS+ L+ETR R +L H + Y ++ C P
Sbjct: 273 LYHKFVSFALEETRLRTTLTPHPSQYLSELCRP 305
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 33 WEYLINRQYHVIWCNIFKAASTSWMYNFNLMANYSAAFLDKTKEVPLVLARRKYARPTIE 92
+EY+ NR + N K + +W FN++ + L ++ L + R I
Sbjct: 625 YEYMHNRSLNTFLFNEEKQSILNWSKRFNIINGIARGILYLHQDSALRIIHRDLKASNIL 684
Query: 93 MIKKAQPDSITFLIVRHPLERLASAYNDKIV 123
+ + P F + R SAY K+V
Sbjct: 685 LDRDMNPKISDFGVARIFGTDQTSAYTKKVV 715
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 90 TIEMIKKAQPDSITFLIVRHPLERLASAYNDKIVHAWPKSFHDKMGRMIIKKYRKSQNKP 149
T+++++ A D + FL + + LASA NDK W D+ G +++K +KP
Sbjct: 222 TVQVLR-AHRDEVWFLQFSNNGKYLASASNDKSAIIWKV---DEDGELLLKHTLTGHDKP 277
Query: 150 V 150
V
Sbjct: 278 V 278
>08_02_1140 + 24649869-24651029
Length = 386
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 164 YVLDETRARRSLDMHWTPYTDFCTPC 189
Y LD+TR L M + TD C PC
Sbjct: 99 YCLDDTRETSLLPMRLSARTDHCQPC 124
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 117 AYNDKIVHAWPKSFHDKMGRMIIKKYRKSQNKPVPTERYPVF--EEFVSYV 165
AY ++VHA +SF + G +I K K + P E PV +E +SY+
Sbjct: 137 AYAQRVVHADRESFERQQGWII--KTMKHEPSPAQDEYAPVIYSQETISYI 185
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 35 YLINRQYHVIWCNIFKAASTSWMY 58
Y Q H CN K A T+WMY
Sbjct: 443 YCTRTQVHNSLCNFVKVADTNWMY 466
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 38 NRQYHVIWCNIFKAASTSWMYNFNLMANYSAAFLDKTKEVPLVLARRKYARPTIEMIKKA 97
++ Y + F +A S+ + +AN A DK+K P LA +Y P E++ KA
Sbjct: 462 DKPYRFVTVKEFVSAFQSF-HTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELL-KA 519
Query: 98 QPDSITFLIVRHPLERLASAYNDKIVH--AWPKSFHDKMGR 136
D L+ R+ + + +V A F KM R
Sbjct: 520 NIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKR 560
>02_05_0385 -
28506326-28506891,28506993-28507405,28507496-28507743,
28507820-28508480,28508572-28509498,28509588-28509847,
28509943-28510143,28515547-28515633,28516200-28516375,
28516465-28516519,28516623-28516910
Length = 1293
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 194 DVILKFETLDEDQRYLIQLARL--QDVVKPEWRNSGKGTNTLHNINHLYSR 242
D+++ + + E R ++ L +L + PEWR G N + N H SR
Sbjct: 162 DILVVQDAISEKGRVILCLCQLCRSEARTPEWRRRGVIGNLVGNFMHYISR 212
>01_06_1070 -
34286660-34287380,34288020-34288094,34288534-34288636,
34288866-34289091
Length = 374
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 165 VLDETRARRSLDMHWTPYTDFCTPCRFAFDVILKFETLD 203
+L E R+R S+ WTP PC F+ +L TLD
Sbjct: 277 ILLEKRSRWSITKSWTPCAIGMVPCSFSSTAVL--PTLD 313
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.136 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,283,002
Number of Sequences: 37544
Number of extensions: 288831
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 9
length of query: 256
length of database: 14,793,348
effective HSP length: 80
effective length of query: 176
effective length of database: 11,789,828
effective search space: 2075009728
effective search space used: 2075009728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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