GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001902-TA|BGIBMGA001902-PA|IPR005331|Chondroitin
4-O-sulfotransferase
         (256 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08490.1 68418.m01005 pentatricopeptide (PPR) repeat-containi...    28   5.3  
At3g16740.1 68416.m02137 F-box family protein contains F-box dom...    28   7.1  
At1g61360.1 68414.m06915 S-locus lectin protein kinase family pr...    28   7.1  
At1g04180.1 68414.m00408 flavin-containing monooxygenase family ...    28   7.1  

>At5g08490.1 68418.m01005 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 849

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 98  QPDSITFLIVRHPLERLASAYNDKIVHAW 126
           +P S+TF IV     RL  +YN K +H++
Sbjct: 119 KPSSVTFAIVLPLCVRLGDSYNGKSMHSY 147


>At3g16740.1 68416.m02137 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 391

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 43  VIWCNIFKAASTSWMYNFNLMANYSAAFLDKTKEVPLVLARRKYA 87
           V W  +F A     +  F    N ++ F+D+ K+V +VL + +++
Sbjct: 303 VSWRKVFLAVDMKSLTGFQFDINAASFFVDEKKKVAMVLDKDRFS 347


>At1g61360.1 68414.m06915 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 821

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/81 (19%), Positives = 33/81 (40%)

Query: 28  QKANAWEYLINRQYHVIWCNIFKAASTSWMYNFNLMANYSAAFLDKTKEVPLVLARRKYA 87
           +K   +EY++N+   +   ++ K     W   FN++   +   L   ++  L +  R   
Sbjct: 566 EKLLVYEYMVNKSLDIFIFDLKKKLEIDWATRFNIIQGIARGLLYLHRDSFLRVVHRDLK 625

Query: 88  RPTIEMIKKAQPDSITFLIVR 108
              I + +K  P    F + R
Sbjct: 626 VSNILLDEKMNPKISDFGLAR 646


>At1g04180.1 68414.m00408 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana; contains Pfam profile PF00743
          Length = 421

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 119 NDKIVHAWPKSFHDKMGRMIIKKYRKSQNKPVPTE--RYPVFEEFVSYV 165
           +D I   W K  +D++   + KK+ +    P P     YP   +F+ Y+
Sbjct: 54  SDCIASLWQKRTYDRLKLHLPKKFCQLPKMPFPDHYPEYPTKRQFIDYL 102


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,022,612
Number of Sequences: 28952
Number of extensions: 244383
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 12,070,560
effective HSP length: 80
effective length of query: 176
effective length of database: 9,754,400
effective search space: 1716774400
effective search space used: 1716774400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)