Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001900-TA|BGIBMGA001900-PA|undefined
(1266 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1... 35 0.40
At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin ... 33 0.92
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)... 33 1.2
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)... 33 1.2
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 33 1.2
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 32 2.1
At4g02530.1 68417.m00346 chloroplast thylakoid lumen protein SP:... 32 2.1
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 32 2.8
At4g02720.1 68417.m00368 expressed protein temporary automated f... 32 2.8
At5g40450.1 68418.m04905 expressed protein 31 3.7
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 31 3.7
At3g10440.1 68416.m01252 hypothetical protein 31 3.7
At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin ... 31 3.7
At3g20350.1 68416.m02578 expressed protein 31 4.9
At1g26150.1 68414.m03192 protein kinase family protein similar t... 31 4.9
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 31 6.5
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI... 31 6.5
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 31 6.5
At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH... 30 8.6
>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
plant glutamate receptor family, PMID:11379626
Length = 861
Score = 34.7 bits (76), Expect = 0.40
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 911 KHKDLMDNVQFSRRDFIKSIESIENEEGPPRQRIKLRSSGTFVKSDEKVLSTTK 964
KHK L +++F + FI I N G + + L +SG+F+ + + LS+TK
Sbjct: 364 KHKGLSGDIKFIDKKFISDKFEIVNMIGRGERSVGLWNSGSFISNRRRRLSSTK 417
>At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin
ERD10 (Low-temperature-induced protein LTI45)
[Arabidopsis thaliana] SWISS-PROT:P42759
Length = 260
Score = 33.5 bits (73), Expect = 0.92
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 888 PENYIKIHESDGFEPDTLDRKHTKHKDLMDNVQFSRRDFI----KSIESIENEEGPPRQR 943
PE+++ HE + +P L++ H KH++ +N + S D + S S +EEG ++
Sbjct: 63 PESFVAKHEEEEHKPTLLEQLHQKHEEEEEN-KPSLLDKLHRSNSSSSSSSDEEGEDGEK 121
Query: 944 IKLRSSGTFVKSDEKVLSTTKFHSLRNACDQRKPIHDRP 982
K V+ D + + + ++ P+ ++P
Sbjct: 122 KKKEKKKKIVEGDHVKTVEEENQGVMDRIKEKFPLGEKP 160
>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 352
Score = 33.1 bits (72), Expect = 1.2
Identities = 46/190 (24%), Positives = 69/190 (36%), Gaps = 12/190 (6%)
Query: 1070 ENDRIPIGEYSKNDNGRSLNPRTFEKNLTTDIVDCDTSTTPESYHGLPCGPMRASVESQS 1129
+ND + S N +S N +E+ L TDI L +++ S S
Sbjct: 126 DNDGVSSSNTSSQKNHQSTNKGQWERRLQTDI----NMAKQALCEALSLDKPSSTLSSSS 181
Query: 1130 SEYDNFHAQPNTTGNFCRTFTKRRIVDASSSGLNTNTFVKNDKIDNKPRNRQKKGTNVQD 1189
S Q N NF R +SSS T T N P ++ ++
Sbjct: 182 SLPTPVITQQNIR-NFSSALLDRCYDPSSSSSSTTTTTTSN---TTNPYPSGVYASSAEN 237
Query: 1190 SGYLSSDSTNSTPFQRKLVVAKIVSCSESDDTENEARSESGAESVETHSVFFNCFRE-QD 1248
L D TP + L ++ SE+ A SE G E E FN E Q+
Sbjct: 238 IARLLQDFMKDTP--KALTLSSSSPVSETGPL-TAAVSEEGGEGFEQSFFSFNSMDETQN 294
Query: 1249 INIESTSYND 1258
+ E++ ++D
Sbjct: 295 LTQETSFFHD 304
>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 351
Score = 33.1 bits (72), Expect = 1.2
Identities = 46/190 (24%), Positives = 69/190 (36%), Gaps = 12/190 (6%)
Query: 1070 ENDRIPIGEYSKNDNGRSLNPRTFEKNLTTDIVDCDTSTTPESYHGLPCGPMRASVESQS 1129
+ND + S N +S N +E+ L TDI L +++ S S
Sbjct: 125 DNDGVSSSNTSSQKNHQSTNKGQWERRLQTDI----NMAKQALCEALSLDKPSSTLSSSS 180
Query: 1130 SEYDNFHAQPNTTGNFCRTFTKRRIVDASSSGLNTNTFVKNDKIDNKPRNRQKKGTNVQD 1189
S Q N NF R +SSS T T N P ++ ++
Sbjct: 181 SLPTPVITQQNIR-NFSSALLDRCYDPSSSSSSTTTTTTSN---TTNPYPSGVYASSAEN 236
Query: 1190 SGYLSSDSTNSTPFQRKLVVAKIVSCSESDDTENEARSESGAESVETHSVFFNCFRE-QD 1248
L D TP + L ++ SE+ A SE G E E FN E Q+
Sbjct: 237 IARLLQDFMKDTP--KALTLSSSSPVSETGPL-TAAVSEEGGEGFEQSFFSFNSMDETQN 293
Query: 1249 INIESTSYND 1258
+ E++ ++D
Sbjct: 294 LTQETSFFHD 303
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 33.1 bits (72), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 1031 TPPTIKQLKNLARPDVLPPLPPAIDYPIYEQPISPPRKVENDRI 1074
T P++ K A PD L P P +D P E P S V+ D++
Sbjct: 46 TKPSVSLTKVFAVPDTLDPTPEILDEPASEVPSSSSISVDADKM 89
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 32.3 bits (70), Expect = 2.1
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 1025 KRQRQSTPPTIKQLKNLARPDVLPPLPPAIDYPIYEQPISPPRKVEND-RIP--IGEYSK 1081
K + + PP + + + P PP PP + P QP PP ++E + P + E SK
Sbjct: 328 KPPQPTLPPQLVEPSRVQSPS--PPPPPPVIQPELPQPQPPPPQLEIEVEAPPDVSEVSK 385
Query: 1082 NDNGRSLNPRTFEKN 1096
G+ P+ + N
Sbjct: 386 GRKGKLPKPKAKDPN 400
>At4g02530.1 68417.m00346 chloroplast thylakoid lumen protein
SP:022773 ;TL16_ARATH
Length = 216
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 361 NQTTSALIHQHREFKINRDNPELSHRDDSGIERLPDEHVSIVETTDDREIMRPVGTTRRK 420
NQT+S+L+ + RE + + ++ S R D + +I+E DD E++ V R+K
Sbjct: 35 NQTSSSLLWKRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKK 94
>At5g21160.1 68418.m02528 La domain-containing protein / proline-rich
family protein contains proline-rich extensin domains,
INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 31.9 bits (69), Expect = 2.8
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 1054 IDYPIYEQPISPPRKVENDRIPIGEYSKNDNGRSLNPRTFEKNLTTDIVDCDTSTTPESY 1113
+D+ +Y S +V+ D+I K D P + + I D D +
Sbjct: 329 VDFIVYALGFSNSVEVQGDQI-----RKRDKWSDWIPASKKSTSAETIGDGDKDSPKSIT 383
Query: 1114 HGLPCG-PMRASVESQSSEYDNFHAQPNTTGNF------CRTFTKRRIVDASSSGLNTNT 1166
G G P + S + S++ + AQ + T N+ KR + D S+ +NT
Sbjct: 384 SGDNFGNPSKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSADEKRNVEDLSNDF--SNT 441
Query: 1167 FVKNDKIDNKPRNRQKKGTNVQDS-GYLSSDSTNSTPFQRKLVV 1209
F+ ++++D + R+ +K G ++ S Y D +KLV+
Sbjct: 442 FLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKLVI 485
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 31.9 bits (69), Expect = 2.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 1216 SESDDTENEARSESGAESVETHSVFFNCFREQDINIESTSYNDSSKSSQDD 1266
SESD E + R + S S FR++ + T Y+DS +SS +D
Sbjct: 140 SESDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDED 190
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 361 NQTTSALIHQHREFKINRDNPELSHRDDSGIERLPDEHVSIVETTDDREIMRPVGTTR 418
N+T + H E +N + P+L D + +P E ETT D+ + P+GT++
Sbjct: 2013 NETERTVALDHEEEFVNHEAPKLEETKDEKSQEIP-ETAKATETTIDQTL--PIGTSQ 2067
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 683 PDMINEAVALDSSKAYNEASSSDDEKLNGNILDELNEGRHIALLNRRNTE 732
P+MI+ SS ++ +++ D NG+ LDE G +++ LN +++
Sbjct: 117 PNMISSPFQASSSLFASDGAAAGDSTGNGDFLDEQQLGNYLSFLNESSSK 166
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 31.5 bits (68), Expect = 3.7
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 1137 AQPNTTGNFCRTFTKRRIVDASSSG-LNTNTFVKNDKIDNKPRNRQKKGTNVQDSGYLSS 1195
AQ N G C+TF +SG N N+ +N+K ++K R +K + +
Sbjct: 153 AQANACGGACKTFQPNDADHEHASGSSNANSLQRNEKANSKRRVSGRKNPANSEVLDIIG 212
Query: 1196 DSTNSTPFQRKLVVAKIVSCSESD 1219
S + + + K+VS S++D
Sbjct: 213 RSGETCQMEDNIDNKKLVSDSDND 236
>At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin
ERD10 (Low-temperature-induced protein LTI45)
[Arabidopsis thaliana] SWISS-PROT:P42759
Length = 259
Score = 31.5 bits (68), Expect = 3.7
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 888 PENYIKIHESDGFEPDTLDRKHTKHKDLMDNV-----QFSRRDFIKSIESIENEEGPPRQ 942
PE+++ HE + +P L++ H KH++ +N + R + S S + E+G ++
Sbjct: 63 PESFVAKHEEEEHKPTLLEQLHQKHEEEEENKPSLLDKLHRSNSSSSSVSKKGEDGEKKK 122
Query: 943 RIKLRS--SGTFVKSDEK 958
+ K + G VK+ E+
Sbjct: 123 KEKKKKIVEGDHVKTVEE 140
>At3g20350.1 68416.m02578 expressed protein
Length = 673
Score = 31.1 bits (67), Expect = 4.9
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 4/173 (2%)
Query: 351 SVMSDDNLYHN-QTTSALIHQHREFKINRDNPE-LSHRDDSGIERLPDEHVSIVETTDDR 408
+V D NL + + ++A Q+ EF+ + E +SH ++ G PDE + + T R
Sbjct: 478 TVSPDVNLINKGRHSNAFTDQNGEFEEDDSGWETVSHSEEHGSSYSPDESIPNISNTHHR 537
Query: 409 EIMRPVGTTRRKLYFNPAYFEPQLMAEPPEAALEFLTKIREVISIAKHKMATKRFQPVLN 468
+ T + E + L + K+ + +++ R V
Sbjct: 538 NSNVSMNGTEYEKTLLREIKEVCSVPRRQSKKLPSMAKLWSSLEGMNGRVSNARKSTVEM 597
Query: 469 EIPEEETYSSSGNNLDLYQRLGSQKSDSVFSLKRDNSRRKDCIGCPGCQSGNS 521
PE + N LDL + S + +L R RK CI P NS
Sbjct: 598 VSPETGSNKGGFNTLDLVGQWSSSPDSANANLNRGG--RKGCIEWPRGAHKNS 648
>At1g26150.1 68414.m03192 protein kinase family protein similar to Pto
kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 1023 HSKRQRQSTPPTIKQLKNLARPDVLPPLPPAIDYPIYEQPISPPRK 1068
H KR+ Q PP K RP PP P P++ P SPP +
Sbjct: 224 HPKRREQPPPPGSK------RPTPSPPSPSDSKRPVHPSPPSPPEE 263
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA mismatch
repair protein PMS2) {Homo sapiens}; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF01119: DNA mismatch
repair protein, C-terminal domain
Length = 923
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1175 NKPRNRQKKGTNVQDSGYLSSDSTNSTPFQRKLVVAKIVSCSESDDTENEARSESGAES 1233
N R ++ + +Q +GY+S +TP +K A + S+ DD E +AR+ + A S
Sbjct: 635 NLRTRRLERLSRLQSTGYVSK--CMNTPQPKKCFAAATLELSQPDDEERKARALAAATS 691
>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
GI:5566292 from [Drosophila melanogaster]; contains
prosite evidence: PS00383: Tyrosine specific protein
phosphatases active site
Length = 632
Score = 30.7 bits (66), Expect = 6.5
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Query: 1041 LARPDVLPPLPPAIDYPIYEQPISPPRKVENDRIPI-GEYSKNDNGRSLNPRTFEKNL-- 1097
++ DVL P P + + P+S R+ D I +K D+ + T + L
Sbjct: 16 VSEKDVLIPEPSENTVGVVQDPVSAEREAHEDSISTEASVAKVDDTQMPASSTGSEPLSK 75
Query: 1098 TTDIVDCDTSTTPESYHGLPCGPMRASVESQSSEYDNFHAQPNTTGNFCRTFTKRRIVDA 1157
T DIV C ++P P + + S + + PN T + FT+
Sbjct: 76 TDDIVPCPPGSSPR--ESPPSIFSSSGLSSWAKSFKFQQQDPNRTDSGMSAFTR----FT 129
Query: 1158 SSSGLNTNTFVKNDKIDNKPRNRQKKG 1184
S GL+ T + D++ N Q G
Sbjct: 130 SELGLHLPTKGSEEVGDSRSSNTQVGG 156
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin family
protein similar to arabinogalactan protein [Daucus
carota] GI:11322245; contains Pfam profile PF01190:
Pollen proteins Ole e I family
Length = 359
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 1032 PPTIKQLKNLARPDVLPPLPPAIDYPIYEQPISPPRKVENDRIPIGEYSKNDNGRSLNPR 1091
PPT +K +P V PP+ P P+ + P+ PP K + P+ +K + P
Sbjct: 166 PPTKAPVKPPTKPPVKPPVSPPAKPPV-KPPVYPPTKAP-VKPPVSPPTKPPVTPPVYPP 223
Query: 1092 TFEKNL 1097
F ++L
Sbjct: 224 KFNRSL 229
Score = 30.3 bits (65), Expect = 8.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 1032 PPTIKQLKNLARPDVLPPLPPAIDYPIYEQPISPPRK 1068
PPT +K +P V PP+ P P+ + P+ PP K
Sbjct: 94 PPTKAPVKPPTKPPVKPPVSPPAKPPV-KPPVYPPTK 129
>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
thaliana]
Length = 292
Score = 30.3 bits (65), Expect = 8.6
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 580 MSLPPLTENRVPKIRKQHSFTTSSSMNNGDDFYVPKNSGTMSIRSEPGVRNHNLPLPEFD 639
M+ P + N V H + ++G P NS + + + + +HN P P F+
Sbjct: 106 MTTPSSSPNSVMMAANDH-YHPLLHHHHGVPMQRPANSVNVKLNQDHHLYHHNKPYPSFN 164
Query: 640 --NITYSRYGQNIAEVNDMNALDVEHYFSGIPRKIDYIPKNNNV 681
N+ ++ G VN N H + + + D NNV
Sbjct: 165 NGNLNHASSGTECGVVNASNGYMSSHVYGSMEQ--DCSMNYNNV 206
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,792,033
Number of Sequences: 28952
Number of extensions: 1404938
Number of successful extensions: 3167
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3138
Number of HSP's gapped (non-prelim): 40
length of query: 1266
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1176
effective length of database: 9,464,880
effective search space: 11130698880
effective search space used: 11130698880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -