GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001900-TA|BGIBMGA001900-PA|undefined
         (1266 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   4.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   4.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   4.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   4.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   4.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   4.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   4.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   4.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   5.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   5.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   7.6  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 798 TPSPHHDITLHPNYYETIRQ 817
           TP  +HD T H + Y+T +Q
Sbjct: 75  TPMVNHDFTQHLSQYDTCQQ 94


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
            hormone receptorisoform A protein.
          Length = 434

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1221 TENEARSESGAESVETHSVFFNCFREQDINIESTSYNDSSKSSQDD 1266
            T N  RS +   + + ++V   CFR ++ +I   ++NDS +S++ +
Sbjct: 385  TANSCRSSTFRNNRDEYNV---CFRPRNNSILIKNFNDSPESNRSN 427


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 811 YYETIRQTNDKSKSCKIINQDH 832
           YYETI    D S +  + N DH
Sbjct: 538 YYETISNHTDASSAKAVKNSDH 559


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 811 YYETIRQTNDKSKSCKIINQDH 832
           YYETI    D S +  + N DH
Sbjct: 538 YYETISNHTDASSAKAVKNSDH 559


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 811 YYETIRQTNDKSKSCKIINQDH 832
           YYETI    D S +  + N DH
Sbjct: 538 YYETISNHTDASSAKAVKNSDH 559


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 811 YYETIRQTNDKSKSCKIINQDH 832
           YYETI    D S +  + N DH
Sbjct: 538 YYETISNHTDASSAKAVKNSDH 559


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 798 TPSPHHDITLHPNYYETIRQ 817
           TP  +HD T H + Y+T +Q
Sbjct: 75  TPMVNHDFTQHLSQYDTCQQ 94


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 798 TPSPHHDITLHPNYYETIRQ 817
           TP  +HD T H + Y+T +Q
Sbjct: 75  TPMVNHDFTQHLSQYDTCQQ 94


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 911  KHKDLMDNVQFSRRDFIKSIESIENEEGPPRQRIKLRSSGTFVKSDE 957
            K  + +  +Q S RD  + IES+E  + P  +   + +  TF++  +
Sbjct: 1097 KENEQLRKIQESLRDLNRKIESLEKMQYPDLRSPAVSNVTTFMEGSK 1143


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 911  KHKDLMDNVQFSRRDFIKSIESIENEEGPPRQRIKLRSSGTFVKSDE 957
            K  + +  +Q S RD  + IES+E  + P  +   + +  TF++  +
Sbjct: 1097 KENEQLRKIQESLRDLNRKIESLEKMQYPDLRSPAVSNVTTFMEGSK 1143


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 311 MRQDDGMIKKNPLLSNTY 328
           MR+D   ++K+PLL+N Y
Sbjct: 88  MRRDMSRLEKSPLLANGY 105


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,080
Number of Sequences: 317
Number of extensions: 13716
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 11
length of query: 1266
length of database: 114,650
effective HSP length: 65
effective length of query: 1201
effective length of database: 94,045
effective search space: 112948045
effective search space used: 112948045
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)