GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001899-TA|BGIBMGA001899-PA|undefined
         (1101 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   5.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   5.0  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   8.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 790 KPKHEVKKRVEKILLKSAGSFKCKSTPSENDTY 822
           +P  EV    +K+LL S G      +P E +T+
Sbjct: 278 QPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETF 310


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 790 KPKHEVKKRVEKILLKSAGSFKCKSTPSENDTY 822
           +P  EV    +K+LL S G      +P E +T+
Sbjct: 278 QPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETF 310


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 732 FGQLDNRSQSISEISV-NTSEPMYDNTSNPG--PLTIQVRGSPIETRRKIKDDFDPDTLD 788
           F +   +S + S+  V N S+P    +  PG  PL + V      +R++  DD      +
Sbjct: 208 FSKRGQKSDADSDSDVVNLSKPGTPPSGEPGNGPLDLSV-----SSRKRSNDDSVSQPPN 262

Query: 789 RKPKHEVKKRV 799
           RKP+ + K +V
Sbjct: 263 RKPRTDFKPQV 273


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 345 TIAKDKMTSKRFVPMLSEIPEEDLYHTIDLGWDIPCARRG 384
           T+AK        V  +    +   +   DL W+ PC R G
Sbjct: 111 TVAKSAALRATMVQSVLNFTDVWGFDGFDLDWEYPCQRGG 150


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,454
Number of Sequences: 317
Number of extensions: 8780
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 1101
length of database: 114,650
effective HSP length: 64
effective length of query: 1037
effective length of database: 94,362
effective search space: 97853394
effective search space used: 97853394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)