Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001899-TA|BGIBMGA001899-PA|undefined
(1101 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 33 0.17
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 31 1.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 29 4.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 4.7
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 28 6.2
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 28 6.2
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 28 6.2
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 28 8.2
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 28 8.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 28 8.2
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 28 8.2
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 996 SPAAIVRTVTKAPVTQVESDTDDLESLCDGRSESGGESVETDSVFFGNFDDSKEMLAELG 1055
+PA IVR + P T V S+ D ES D SES S+ + N D S ++
Sbjct: 334 APAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSP--SENSDTSDDLTKVDS 391
Query: 1056 LNNFETHNKISGGHEQ 1071
N ++ +S H++
Sbjct: 392 PNKSLVNDNVSAKHDK 407
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 778 IKDDFDPDTLDRKP---KHEVKKRVEKILLKSAGSFKCKSTPSENDT 821
+ DD D D K KHE+ R I+++ S + PSENDT
Sbjct: 312 VNDDSSSDVSDEKETEAKHEI--RAPAIIVRETSSHPSTAVPSENDT 356
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 706 NYGRLAKSWRDVKKAVEEENKL-NAHVFGQLDNRSQSISEISVNTSEPMYDNTSN 759
N G L K W+ V+ +E+E L LD ++ +++ V + +P+ D +SN
Sbjct: 303 NSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHNQVVVPSQQPVADKSSN 357
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 688 CGTELFQNEMVTSGSKPVNYGRLAKSWRDVKKAVEEENKLNAHVFGQLDN 737
C + FQ E G+ N R+ S+ D+ KA++E +H+ L N
Sbjct: 112 CERDTFQGERCLYGALNDNIRRMLLSY-DITKAIDESQPYASHITSLLSN 160
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 4.7
Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 4/193 (2%)
Query: 904 SPKFSNMTRESPPGERRRGTEEKDRFSQYSRMENLNAXXXXXXXXXXXXXXXXXXXXXXX 963
S + ++ + S E +E+ D S S E+ ++
Sbjct: 122 SSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSED-- 179
Query: 964 EDSGYMSTDS-NESKRRASYLMQLRPKMNFPEHSPAAIVRTVTKAPVTQVES-DTDDLES 1021
DS S+DS +ES S S + + + + ++ S D D S
Sbjct: 180 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSS 239
Query: 1022 LCDGRSESGGESVETDSVFFGNFDDSKEMLAELGLNNFETHNKISGGHEQIDSGYMGETN 1081
D SES E ++ S + +S ++ N+ ++ + S +S E +
Sbjct: 240 SSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDS 299
Query: 1082 IILSGDSDSEHRS 1094
S SDS+ S
Sbjct: 300 DSTSSSSDSDSSS 312
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 669 MDYDSLERSLVRRRRFSLACGTELFQNEMVTSGSKPVNYGRLAKSWRDVKKAVEEENK 726
MDYDS++ ++ + AC T+ + ++ + S ++ G ++D K + E K
Sbjct: 64 MDYDSMDNIFFAKQVINNACATQALLS-VLLNHSDEIDLGTTLSEFKDFSKTLPPELK 120
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 4 ANVTRLATGDLFSLIGTDC---GPTRCMEISHGTALAAMGGD 42
ANVT DLFSL G +C G + + S TA A GG+
Sbjct: 6 ANVTTAHVLDLFSLKGKNCVVFGAAKGIGFSIATAFAQAGGN 47
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 760 PGPLTIQVRG-SPIETRRKIKDDFDPDTLDRKPKHEVKKRVEKILLKSAGSFKCKSTPSE 818
P P T+Q + SP R ++ DPD P+H+ K + K L A S +++P
Sbjct: 588 PKPTTLQKQQQSPSPWRSELFLS-DPDQNVLTPRHKPKFDLSKALSSVAKSNNIENSPQL 646
Query: 819 NDTYKKSPQMAITQKIGN 836
+ Y S ++ + ++ N
Sbjct: 647 PERYDFSLELGLNSQLDN 664
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 988 PKMNFPEHSPAAIVRTVTKAPVTQVESDTDDLESLCDGRSESGGESVETDSVFFGNFDDS 1047
P +FP A K PV + ES+ ++ SL SE G + D FG++ S
Sbjct: 212 PPTDFPGAKEQASTGNAPKNPVNENESEDEEGLSL----SEDGKKFANID---FGDYSSS 264
Query: 1048 KEMLAE 1053
+E L E
Sbjct: 265 EEFLKE 270
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 11 TGDLFSLIGTDCGPTRCMEISHGTALAAMGGDS 43
TG LF ++ P R + S G+ L A GDS
Sbjct: 176 TGRLFHVLSGHTSPVRSVAFSPGSTLLAAAGDS 208
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 8.2
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 73 MAKFGRDGTKPLIPFVFLPLKGQIIYPSKEIIFTDVEDAIC--AVTSAQYLTASGWVNLR 130
M++ T PL F LK + PS + I VE + AV S +L G ++
Sbjct: 617 MSRVAETQTIPLSKFDS-SLKSYLA-PSSDPILDAVERVLRMPAVASKSFLITIGDRSVT 674
Query: 131 DVIDNDVPFGLYR----DEGSTFLQWRGSAALHARLEGRLVAVHVLCSGSSSTRLAASCA 186
+I D G ++ D G T + L + L S ++S R+A +
Sbjct: 675 GLIARDQMVGPWQVPVADVGVTVTSYGKGINTGEALAMGEKPISALVSAAASARMAVAEC 734
Query: 187 AFRVAGASQNGLLDVR------SIPFHAGEAIPADSTPQSQGLSVLESLAIGVCV 235
+ AS L +R + P H GE Q+ GL + SL I + V
Sbjct: 735 IMNLVAASIPALDRIRLSANWMAAPSHPGEGAKLYEAVQAIGLELCPSLGISIPV 789
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 200 DVRSIPFHAGEAIPADSTPQSQGLSVLESL 229
D ++P H+G+ +P D+TP + +LE++
Sbjct: 56 DFLTVPKHSGKKVPIDTTPTPRDEILLENV 85
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,504,196
Number of Sequences: 5004
Number of extensions: 179028
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 13
length of query: 1101
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1021
effective length of database: 1,962,158
effective search space: 2003363318
effective search space used: 2003363318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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