SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001899-TA|BGIBMGA001899-PA|undefined
         (1101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           36   0.18 
07_03_1048 - 23545060-23546381,23546479-23546554                       36   0.18 
04_02_0011 - 8513471-8513673,8513815-8513869                           36   0.18 
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    36   0.18 
06_01_0460 + 3276855-3277967                                           33   0.96 
04_01_0319 - 4291144-4293402                                           33   1.3  
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274...    32   2.2  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    32   2.9  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    31   3.9  
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    31   5.1  
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634...    31   5.1  
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954...    31   5.1  
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    31   5.1  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    31   6.7  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    30   8.9  
03_06_0195 + 32256771-32258792                                         30   8.9  
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509           30   8.9  

>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 209 GEAIPADSTPQSQGLS-VLESLAIGVCVLMLIFVYAAGIIFYIHY-KQRQKKKQKDVEQN 266
           G  +  D T  S   + V+   A+G  V+M I V   G+I +I   K   KKK+KD+E+N
Sbjct: 232 GRPLSNDCTATSSSRTGVIIGSAVGGAVIMFIIV---GVILFIFLRKMPAKKKEKDLEEN 288

Query: 267 --MSDNGSAMEPRLDM---SNVMMKTNPLLKLNG 295
               +  SA   ++ M   S   MK N L+K  G
Sbjct: 289 KWAKNIKSAKGAKVSMFEKSVAKMKLNDLMKATG 322


>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 166 LVAVHVLCSGSSSTRLAASCAAFRVAGASQNGL---LDVRSIPFHAGEAIPAD----STP 218
           L++  VLC+G+ +  LA S AAF  AG   NG+   L + S+P +AGE  P+      T 
Sbjct: 74  LLSAAVLCAGALARGLATSFAAFE-AGVFVNGVGMGLALMSVPAYAGELSPSSLHRGLTS 132

Query: 219 QSQGLSVLESLAIGVC 234
              G   L  +  G+C
Sbjct: 133 HPDGFVCLGCILGGLC 148


>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 1007 APVTQVESDTDDL--ESLCDGRSESGGESVETDSVFFGNFDDSKEMLAELGLN 1057
            AP+T+V     D   +++C  + +S GE   TD +++ NF  +   L ++GLN
Sbjct: 33   APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNFCANSPPLPQIGLN 85


>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 252 YKQRQK-KKQKDVEQNMSDNGSAMEPRLDMSNVMMKTNPLLKLNGMGNDFFNSENTMSDG 310
           YKQ Q+ ++Q+ V+Q   D+G+ M+P         K  P  +L+ M N+  N+E+T    
Sbjct: 24  YKQLQEFQRQQQVQQ--LDHGARMQPSFGQFQAPAKPLPTDQLSAMTNEMPNNESTAYAW 81

Query: 311 SENMDGTMD 319
           S  + G+ D
Sbjct: 82  SHQLHGSSD 90


>06_01_0460 + 3276855-3277967
          Length = 370

 Score = 33.5 bits (73), Expect = 0.96
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 83  PLIPFVFLPLKGQIIYPSKEIIFTDVEDAICAVTSAQYLTASGWVNLRDVIDNDVP 138
           PL+P++ +P +G  +  S E  F    DA C        +  GW  +  + D + P
Sbjct: 243 PLLPWLMVPFRGPAVPGSPEAEFNAAHDATCRKARRTVRSLKGWGAIARLRDEESP 298


>04_01_0319 - 4291144-4293402
          Length = 752

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 695 NEMVTSGSKPVNYGRLAKSWRDVKKAVEEENKLNAHVFGQLD-NRSQSISEISVN 748
           +++ +S S P N  RL   WR   K +E++NKL   +  Q + +R Q    + +N
Sbjct: 594 DDLESSSSSPRNICRLRDLWRVSPKTIEQQNKLAGMLIKQWEWDRKQESGAVELN 648


>07_03_0363 +
           17225472-17226778,17226910-17226917,17227313-17227488,
           17227822-17227882,17227955-17228053,17228155-17228249,
           17228411-17228482,17228668-17228735,17228934-17229390,
           17229486-17229596
          Length = 817

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 19/71 (26%), Positives = 32/71 (45%)

Query: 755 DNTSNPGPLTIQVRGSPIETRRKIKDDFDPDTLDRKPKHEVKKRVEKILLKSAGSFKCKS 814
           DN  N   + IQ+ G+ +E R   ++D D +  DR+ K   K +      K +      +
Sbjct: 258 DNDRNDRRIGIQLGGNSVERRENQREDRDAEKWDRERKDSQKDKEGNDREKDSAKESSVA 317

Query: 815 TPSENDTYKKS 825
           T  EN   +K+
Sbjct: 318 TEKENAILEKT 328


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 817 SENDTYKKSPQMAITQKIGNLRQIYXXXXXXXXXXVQFYNRRGSVPCG---GQDIQAFMR 873
           S N      P++ I+ +  +L +++           + Y+   S  C     +DI+ F+R
Sbjct: 347 SGNSNMHDDPRIKISDRYSSLCRMFVRIASTAAKSEETYSM--STNCAEKLAEDIEKFLR 404

Query: 874 SLKAPDLIRHIENQKERPPVPPKQRRGIDLSPK 906
               PDL +    Q  +    PK+ RGI L  K
Sbjct: 405 IRSDPDLDKSPSPQVGKENQMPKKPRGIKLKEK 437


>06_01_0893 -
           6834350-6834464,6835042-6835218,6835301-6835350,
           6836348-6836416,6836495-6836593,6836681-6836759,
           6837604-6837704,6838645-6838713,6839548-6839588,
           6839793-6841159,6841472-6841575,6841914-6842351,
           6843040-6843567
          Length = 1078

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 728 NAHVFGQLDNRSQSISEISVNTSEPMYDNTSNPGPLTIQVRGSPIETRRKIKDDFDPDTL 787
           N  V  +  N   ++S  S + S    +N+S+  P + +V G+P   R K+KD  +    
Sbjct: 467 NLPVIHESRNTDHTMSTQSKDKSSAA-NNSSSSSPSSSEVGGAPAVRRMKVKDVSEYMIS 525

Query: 788 DRKPKHEVKKRVEKILLKS 806
             K   ++ +R+  +LL++
Sbjct: 526 AAKENPQIAERIHAVLLEN 544


>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 643 DSYYSDDNMLT-LGRNKEIYMNPQEEFMDYDSLERSLVRRRRFSLACGTELFQNEMVTSG 701
           D++ + DN L+ L   +E+Y N Q+E  + D++ + L      S     +          
Sbjct: 234 DNHVNGDNQLSSLAAEQELY-NLQKECEEKDAIIKELAATAHTSSTADAKRIAELQEILK 292

Query: 702 SKPVNYGRLAKSWRDVKKAVEEENKLNAHVFGQLDNRSQSISEISVNTSEPMYDNTSNPG 761
            K +   +L K    +K+ V E  +          N S S SE+ V +S  +YD  S+  
Sbjct: 293 RKNMVISKLKKDMSALKQMVVELTRAKRT---SSVNLSTSCSELPVMSSNVLYD-MSSTS 348

Query: 762 PLTIQVRGSPIETRRKIKDDFDPD 785
           P +     SP+  R  + D    D
Sbjct: 349 PSSSDSE-SPVAPREYLDDHLKVD 371


>05_05_0303 - 23958989-23960563,23962628-23962864,23963250-23963449,
            23964088-23964250,23964348-23964554,23964667-23964798
          Length = 837

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 970  STDSNESKRRASYLMQLRPKMNFPEHSPAAIVRTVTKAPVTQVESDT---DDLESLCDGR 1026
            +T      R AS L ++ P  +     P  I    +   ++  +S T   ++ ES     
Sbjct: 555  TTPGTPRTRIASVLDEIDPLSSADSPHPDPIQNDDSDNHMSLQDSRTVRDNNYESDKSKA 614

Query: 1027 SESGGESVETDSVFFGNFDDSKEMLAELGLNNFETHNKI 1065
            +++  ++V TD  F G  DD K ++ +LG +  E H ++
Sbjct: 615  NKNDDKNVSTDPAFLGTVDDDKNVM-DLGYSEVERHRRL 652


>04_04_0173 -
           23294511-23294601,23294719-23294849,23295160-23295483,
           23296016-23296147,23296225-23296373,23296536-23296670,
           23296997-23297090,23297199-23297318,23298096-23298182,
           23298273-23298386,23299089-23299270,23299960-23300023,
           23300191-23300337,23300636-23300845,23301048-23301217,
           23301355-23301477,23301589-23301661,23301765-23301857
          Length = 812

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 886 NQKERPPVPPKQRRGIDLSPKFSNMTRESPPGERRRGTEEKDR 928
           +  ++P   PKQR G+D       + R+ PP +    TE K R
Sbjct: 13  SSSKKPKAKPKQRGGVDFKKYKHKVGRKLPPPKNATDTEIKSR 55


>03_05_0226 - 22115285-22115404,22115477-22116661,22117037-22117861,
            22118029-22118106,22118370-22118420,22118510-22118581,
            22118666-22118667,22119453-22119557,22119668-22119749,
            22120178-22120227,22120514-22120567,22121084-22121164,
            22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 1014 SDTDDLESLCDGRSESGGESV-ETDSVFFGNFDDSKEMLAELGLNNF---ETHNKISGGH 1069
            S+  ++++  D  +E G ++    D+V   + D + EML E  +NNF   E      G +
Sbjct: 325  SNGQNVQNSADNSTEIGNQATTNVDTVESNDLDANGEMLTEEDINNFLEQEQEEATKGNN 384

Query: 1070 EQIDSGYM 1077
              ID+ Y+
Sbjct: 385  AAIDAKYI 392


>07_03_0918 -
           22581625-22581687,22581773-22581868,22581980-22582268,
           22582341-22582477,22582567-22582683,22583277-22583440,
           22583542-22583756,22583838-22584004,22584206-22584559,
           22584647-22584795,22584907-22585030,22585132-22585371,
           22585723-22586140,22586297-22586920,22586999-22587183,
           22587302-22587412,22587583-22587789,22587869-22587967,
           22588063-22588159,22588296-22588384,22588495-22588548,
           22588671-22588793,22588872-22588940,22589020-22589089,
           22589202-22589260,22589367-22589570,22590032-22590060,
           22590375-22590433,22590513-22590634,22591637-22591830,
           22591974-22592088
          Length = 1680

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 760 PGPLTIQVRGSPIETRRKIKDDFDPDTLDRKPKHEVKKR-VEKILLKSAGSFKCKS-TPS 817
           P  L  ++  S ++   K+KDDF       KP+ E ++R V  IL  +    K  S T +
Sbjct: 686 PKELLEEIYDSIVQEEIKMKDDFPDSAKTNKPRRETEERGVVNILNLALPRLKSASDTKA 745

Query: 818 ENDTYKKSPQMAITQKIGNLRQIY 841
           E++   K  Q A+ +  G  R ++
Sbjct: 746 ESEKIIKQTQ-ALFKNQGQKRGVF 768


>04_04_0923 + 29441740-29441980,29442321-29442401,29442630-29442719,
            29443123-29443203,29443721-29443774,29444062-29444111,
            29444542-29444623,29444734-29444838,29445514-29445641,
            29445726-29445797,29445887-29445937,29446029-29446100,
            29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 1014 SDTDDLESLCDGRSESGGESV-ETDSVFFGNFDDSKEMLAELGLNNF---ETHNKISGGH 1069
            S+  ++++  D  +E G ++    D+V   + D + EML E  +NNF   E      G +
Sbjct: 391  SNGQNVQNSADNSTEIGNQATTNVDTVESNDSDANGEMLTEEDINNFLEQEQEEATKGNN 450

Query: 1070 EQIDSGYM 1077
              ID+ Y+
Sbjct: 451  AAIDAKYI 458


>03_06_0195 + 32256771-32258792
          Length = 673

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 1013 ESDTDDLESLCDGRSESGGESVETDSVFFGNFDDSKEMLAELGLNNFETHNKI---SGGH 1069
            E DT DLES  D  +ES   S + D     + DD  E L + G   F+  +KI   +   
Sbjct: 210  EEDTTDLESDSDEDTESTESSHDED-----DLDDDDESLDDDGSECFDEEDKIGTENPDD 264

Query: 1070 EQIDSGYMGETNIILSGDSDSE 1091
            E +D+G   E       DS S+
Sbjct: 265  ESVDTGSSDEEESDDEEDSYSD 286


>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
          Length = 332

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 9   LATGDLFSLIGTDCGPTRCMEISHGTALAAMGGDSSSCMCRC 50
           +ATG L  L G      R M  S GT  AA GG   +C   C
Sbjct: 164 MATGCLVDLNGACPADLRVMAASTGTGAAAPGGGPVACRSAC 205


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,038,399
Number of Sequences: 37544
Number of extensions: 1174923
Number of successful extensions: 2826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2813
Number of HSP's gapped (non-prelim): 22
length of query: 1101
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1011
effective length of database: 11,414,388
effective search space: 11539946268
effective search space used: 11539946268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)

- SilkBase 1999-2023 -