Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001899-TA|BGIBMGA001899-PA|undefined
(1101 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 36 0.18
07_03_1048 - 23545060-23546381,23546479-23546554 36 0.18
04_02_0011 - 8513471-8513673,8513815-8513869 36 0.18
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 36 0.18
06_01_0460 + 3276855-3277967 33 0.96
04_01_0319 - 4291144-4293402 33 1.3
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274... 32 2.2
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 32 2.9
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 31 3.9
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 31 5.1
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 31 5.1
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 31 5.1
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 31 5.1
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 31 6.7
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 8.9
03_06_0195 + 32256771-32258792 30 8.9
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 30 8.9
>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
Length = 634
Score = 35.9 bits (79), Expect = 0.18
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 209 GEAIPADSTPQSQGLS-VLESLAIGVCVLMLIFVYAAGIIFYIHY-KQRQKKKQKDVEQN 266
G + D T S + V+ A+G V+M I V G+I +I K KKK+KD+E+N
Sbjct: 232 GRPLSNDCTATSSSRTGVIIGSAVGGAVIMFIIV---GVILFIFLRKMPAKKKEKDLEEN 288
Query: 267 --MSDNGSAMEPRLDM---SNVMMKTNPLLKLNG 295
+ SA ++ M S MK N L+K G
Sbjct: 289 KWAKNIKSAKGAKVSMFEKSVAKMKLNDLMKATG 322
>07_03_1048 - 23545060-23546381,23546479-23546554
Length = 465
Score = 35.9 bits (79), Expect = 0.18
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 166 LVAVHVLCSGSSSTRLAASCAAFRVAGASQNGL---LDVRSIPFHAGEAIPAD----STP 218
L++ VLC+G+ + LA S AAF AG NG+ L + S+P +AGE P+ T
Sbjct: 74 LLSAAVLCAGALARGLATSFAAFE-AGVFVNGVGMGLALMSVPAYAGELSPSSLHRGLTS 132
Query: 219 QSQGLSVLESLAIGVC 234
G L + G+C
Sbjct: 133 HPDGFVCLGCILGGLC 148
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 35.9 bits (79), Expect = 0.18
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 1007 APVTQVESDTDDL--ESLCDGRSESGGESVETDSVFFGNFDDSKEMLAELGLN 1057
AP+T+V D +++C + +S GE TD +++ NF + L ++GLN
Sbjct: 33 APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNFCANSPPLPQIGLN 85
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 35.9 bits (79), Expect = 0.18
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 252 YKQRQK-KKQKDVEQNMSDNGSAMEPRLDMSNVMMKTNPLLKLNGMGNDFFNSENTMSDG 310
YKQ Q+ ++Q+ V+Q D+G+ M+P K P +L+ M N+ N+E+T
Sbjct: 24 YKQLQEFQRQQQVQQ--LDHGARMQPSFGQFQAPAKPLPTDQLSAMTNEMPNNESTAYAW 81
Query: 311 SENMDGTMD 319
S + G+ D
Sbjct: 82 SHQLHGSSD 90
>06_01_0460 + 3276855-3277967
Length = 370
Score = 33.5 bits (73), Expect = 0.96
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 83 PLIPFVFLPLKGQIIYPSKEIIFTDVEDAICAVTSAQYLTASGWVNLRDVIDNDVP 138
PL+P++ +P +G + S E F DA C + GW + + D + P
Sbjct: 243 PLLPWLMVPFRGPAVPGSPEAEFNAAHDATCRKARRTVRSLKGWGAIARLRDEESP 298
>04_01_0319 - 4291144-4293402
Length = 752
Score = 33.1 bits (72), Expect = 1.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 695 NEMVTSGSKPVNYGRLAKSWRDVKKAVEEENKLNAHVFGQLD-NRSQSISEISVN 748
+++ +S S P N RL WR K +E++NKL + Q + +R Q + +N
Sbjct: 594 DDLESSSSSPRNICRLRDLWRVSPKTIEQQNKLAGMLIKQWEWDRKQESGAVELN 648
>07_03_0363 +
17225472-17226778,17226910-17226917,17227313-17227488,
17227822-17227882,17227955-17228053,17228155-17228249,
17228411-17228482,17228668-17228735,17228934-17229390,
17229486-17229596
Length = 817
Score = 32.3 bits (70), Expect = 2.2
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 755 DNTSNPGPLTIQVRGSPIETRRKIKDDFDPDTLDRKPKHEVKKRVEKILLKSAGSFKCKS 814
DN N + IQ+ G+ +E R ++D D + DR+ K K + K + +
Sbjct: 258 DNDRNDRRIGIQLGGNSVERRENQREDRDAEKWDRERKDSQKDKEGNDREKDSAKESSVA 317
Query: 815 TPSENDTYKKS 825
T EN +K+
Sbjct: 318 TEKENAILEKT 328
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 31.9 bits (69), Expect = 2.9
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 817 SENDTYKKSPQMAITQKIGNLRQIYXXXXXXXXXXVQFYNRRGSVPCG---GQDIQAFMR 873
S N P++ I+ + +L +++ + Y+ S C +DI+ F+R
Sbjct: 347 SGNSNMHDDPRIKISDRYSSLCRMFVRIASTAAKSEETYSM--STNCAEKLAEDIEKFLR 404
Query: 874 SLKAPDLIRHIENQKERPPVPPKQRRGIDLSPK 906
PDL + Q + PK+ RGI L K
Sbjct: 405 IRSDPDLDKSPSPQVGKENQMPKKPRGIKLKEK 437
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 31.5 bits (68), Expect = 3.9
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 728 NAHVFGQLDNRSQSISEISVNTSEPMYDNTSNPGPLTIQVRGSPIETRRKIKDDFDPDTL 787
N V + N ++S S + S +N+S+ P + +V G+P R K+KD +
Sbjct: 467 NLPVIHESRNTDHTMSTQSKDKSSAA-NNSSSSSPSSSEVGGAPAVRRMKVKDVSEYMIS 525
Query: 788 DRKPKHEVKKRVEKILLKS 806
K ++ +R+ +LL++
Sbjct: 526 AAKENPQIAERIHAVLLEN 544
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 31.1 bits (67), Expect = 5.1
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 643 DSYYSDDNMLT-LGRNKEIYMNPQEEFMDYDSLERSLVRRRRFSLACGTELFQNEMVTSG 701
D++ + DN L+ L +E+Y N Q+E + D++ + L S +
Sbjct: 234 DNHVNGDNQLSSLAAEQELY-NLQKECEEKDAIIKELAATAHTSSTADAKRIAELQEILK 292
Query: 702 SKPVNYGRLAKSWRDVKKAVEEENKLNAHVFGQLDNRSQSISEISVNTSEPMYDNTSNPG 761
K + +L K +K+ V E + N S S SE+ V +S +YD S+
Sbjct: 293 RKNMVISKLKKDMSALKQMVVELTRAKRT---SSVNLSTSCSELPVMSSNVLYD-MSSTS 348
Query: 762 PLTIQVRGSPIETRRKIKDDFDPD 785
P + SP+ R + D D
Sbjct: 349 PSSSDSE-SPVAPREYLDDHLKVD 371
>05_05_0303 - 23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 31.1 bits (67), Expect = 5.1
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 970 STDSNESKRRASYLMQLRPKMNFPEHSPAAIVRTVTKAPVTQVESDT---DDLESLCDGR 1026
+T R AS L ++ P + P I + ++ +S T ++ ES
Sbjct: 555 TTPGTPRTRIASVLDEIDPLSSADSPHPDPIQNDDSDNHMSLQDSRTVRDNNYESDKSKA 614
Query: 1027 SESGGESVETDSVFFGNFDDSKEMLAELGLNNFETHNKI 1065
+++ ++V TD F G DD K ++ +LG + E H ++
Sbjct: 615 NKNDDKNVSTDPAFLGTVDDDKNVM-DLGYSEVERHRRL 652
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 31.1 bits (67), Expect = 5.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 886 NQKERPPVPPKQRRGIDLSPKFSNMTRESPPGERRRGTEEKDR 928
+ ++P PKQR G+D + R+ PP + TE K R
Sbjct: 13 SSSKKPKAKPKQRGGVDFKKYKHKVGRKLPPPKNATDTEIKSR 55
>03_05_0226 - 22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 31.1 bits (67), Expect = 5.1
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 1014 SDTDDLESLCDGRSESGGESV-ETDSVFFGNFDDSKEMLAELGLNNF---ETHNKISGGH 1069
S+ ++++ D +E G ++ D+V + D + EML E +NNF E G +
Sbjct: 325 SNGQNVQNSADNSTEIGNQATTNVDTVESNDLDANGEMLTEEDINNFLEQEQEEATKGNN 384
Query: 1070 EQIDSGYM 1077
ID+ Y+
Sbjct: 385 AAIDAKYI 392
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 30.7 bits (66), Expect = 6.7
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 760 PGPLTIQVRGSPIETRRKIKDDFDPDTLDRKPKHEVKKR-VEKILLKSAGSFKCKS-TPS 817
P L ++ S ++ K+KDDF KP+ E ++R V IL + K S T +
Sbjct: 686 PKELLEEIYDSIVQEEIKMKDDFPDSAKTNKPRRETEERGVVNILNLALPRLKSASDTKA 745
Query: 818 ENDTYKKSPQMAITQKIGNLRQIY 841
E++ K Q A+ + G R ++
Sbjct: 746 ESEKIIKQTQ-ALFKNQGQKRGVF 768
>04_04_0923 + 29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 30.3 bits (65), Expect = 8.9
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 1014 SDTDDLESLCDGRSESGGESV-ETDSVFFGNFDDSKEMLAELGLNNF---ETHNKISGGH 1069
S+ ++++ D +E G ++ D+V + D + EML E +NNF E G +
Sbjct: 391 SNGQNVQNSADNSTEIGNQATTNVDTVESNDSDANGEMLTEEDINNFLEQEQEEATKGNN 450
Query: 1070 EQIDSGYM 1077
ID+ Y+
Sbjct: 451 AAIDAKYI 458
>03_06_0195 + 32256771-32258792
Length = 673
Score = 30.3 bits (65), Expect = 8.9
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1013 ESDTDDLESLCDGRSESGGESVETDSVFFGNFDDSKEMLAELGLNNFETHNKI---SGGH 1069
E DT DLES D +ES S + D + DD E L + G F+ +KI +
Sbjct: 210 EEDTTDLESDSDEDTESTESSHDED-----DLDDDDESLDDDGSECFDEEDKIGTENPDD 264
Query: 1070 EQIDSGYMGETNIILSGDSDSE 1091
E +D+G E DS S+
Sbjct: 265 ESVDTGSSDEEESDDEEDSYSD 286
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 30.3 bits (65), Expect = 8.9
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 9 LATGDLFSLIGTDCGPTRCMEISHGTALAAMGGDSSSCMCRC 50
+ATG L L G R M S GT AA GG +C C
Sbjct: 164 MATGCLVDLNGACPADLRVMAASTGTGAAAPGGGPVACRSAC 205
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,038,399
Number of Sequences: 37544
Number of extensions: 1174923
Number of successful extensions: 2826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2813
Number of HSP's gapped (non-prelim): 22
length of query: 1101
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1011
effective length of database: 11,414,388
effective search space: 11539946268
effective search space used: 11539946268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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