GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001899-TA|BGIBMGA001899-PA|undefined
         (1101 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 760 PGPLTIQVRGSPIETRRKIKDDFDPDTLDRKPKHEVKKRVEKILLKSAGSFKC 812
           P   T  VRG+PI+T   +KD   P  L+     E   R+E +  +  G ++C
Sbjct: 324 PATFTCNVRGNPIKTVSWLKDG-KPLGLE-----EAVLRIESVKKEDKGMYQC 370


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 262 DVEQNMSDNGS-AMEPRLDMSNVMMKTNPLLKLNGMGN 298
           D++ +MSD  S + +   D  N+MM T  LL L   G+
Sbjct: 346 DIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGS 383


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,725
Number of Sequences: 429
Number of extensions: 11581
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 1101
length of database: 140,377
effective HSP length: 65
effective length of query: 1036
effective length of database: 112,492
effective search space: 116541712
effective search space used: 116541712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)