Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001899-TA|BGIBMGA001899-PA|undefined
(1101 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof... 34 0.60
At2g46900.1 68415.m05857 expressed protein contains Pfam profile... 31 3.2
At4g32780.1 68417.m04663 expressed protein 31 4.2
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 31 4.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 31 4.2
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote... 31 5.6
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 5.6
At5g48240.1 68418.m05960 hypothetical protein 30 7.4
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 30 7.4
At1g52290.1 68414.m05900 protein kinase family protein contains ... 30 7.4
>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
PF04784: Protein of unknown function, DUF547, weak hit to
PF00462: Glutaredoxin
Length = 587
Score = 33.9 bits (74), Expect = 0.60
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 993 PEHSPAAIVRTVTKAPVTQVESDTDDLESLCDGRSESGGESVETD---SVFFGNFDDSKE 1049
P+H+ T+ PV ++E + +++ES+ E G +V D SV + DD E
Sbjct: 47 PKHNVEKKEEEFTRKPVVEIEEEEEEMESIDIHEEEEGDNNVSLDEIMSVDSSDDDDDSE 106
Query: 1050 MLAEL 1054
AE+
Sbjct: 107 SSAEI 111
>At2g46900.1 68415.m05857 expressed protein contains Pfam profile
PF04910: Protein of unknown function, DUF654
Length = 627
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 1000 IVRTVTKAPVTQVESDTDDLES-LCDGRSESGGESVETDSVFFGNFDDSKEMLAELGLNN 1058
++R+ + +E D + ES LC E+ + + +F DS L L N
Sbjct: 498 LLRSAADLVIESLEQDGTEAESWLCVRLEAFSSENNQYSHLSTHDFSDSMPTLPPDNLQN 557
Query: 1059 FETHNKISGGHEQIDSGYMGETNIILSGDSDSEHRSVISIV 1099
F ++ GG + + G G+ D +RS ++++
Sbjct: 558 FVADPRMVGGEQMAEGGGRGQHQAPPPRPRDLANRSPLAVL 598
>At4g32780.1 68417.m04663 expressed protein
Length = 224
Score = 31.1 bits (67), Expect = 4.2
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 873 RSLKAPDLIRHIENQKERPPVPPKQRRGIDLSPKFSNMTRESPPGERRRGTEEKDRFSQY 932
RS L+ H+ N K PP+ P R G ++ + +M R G R + +EK +
Sbjct: 66 RSWSISALLPHVGN-KTSPPITP--RTGREMKHLYKSMIRGRTMGRRLKDQKEKKKQETR 122
Query: 933 SRMENLNAXXXXXXXXXXXXXXXXXXXXXXXEDS 966
+R ++A ED+
Sbjct: 123 TRNAEIHAAVSVAGVAAVVAATAASNAIAAAEDA 156
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 31.1 bits (67), Expect = 4.2
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 172 LCSGSSSTRLAASCAAFRVAGASQNGLL----DVRSIPFHAGEAIPADSTPQSQGLSVLE 227
L +GS T L S R + N L D R + F + EA+ PQ +
Sbjct: 329 LLTGSLPTCLKPSSGTSRDVVYASNCLATTNEDQRPVSFCSNEALAVGILPQRRNKVSKV 388
Query: 228 SLAIGVCVLMLIFVYAAGIIFYIHYKQRQKKKQKDVEQNMSDNGSAMEPRLDMSNVMMKT 287
+A+GV +L + AG +F + + KK + ++M + +
Sbjct: 389 GIALGVTASILGVLLLAGALFVVLRRLNAKKTVTKSSPRLIRENASMGYTSKLLSDARYI 448
Query: 288 NPLLKLNGMG 297
+ +KL G+G
Sbjct: 449 SQTMKLGGLG 458
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 31.1 bits (67), Expect = 4.2
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 743 SEISVNTSEPMYDNTSNPGPLTIQVRGSPIETRRKIKDDFDPDTLDRKPKHEVKKRVEKI 802
S ++VN + P Y S+ PL G P + K+K+ DP+ L + EVK+ +E +
Sbjct: 119 SSVAVNENPPFYGIPSHAKPLL----GKP-KNILKLKNVVDPEDLTSFSEQEVKEILEDV 173
Query: 803 LLKSA 807
L+ A
Sbjct: 174 RLECA 178
>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
kinase, putative
Length = 935
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 218 PQSQGLSVLESLAIGVCVLMLIFVYAAGIIFYIHYKQRQKKKQKDVEQNMSDNGSAMEPR 277
P+ G+S+ +++G+ + + F + + + +R K+K+K E +M +P
Sbjct: 529 PKKSGMSI--GVSVGIIIGAIAFFLVLSSLALVFFIKRSKRKRKTREVDMEQEHPLPKPP 586
Query: 278 LDMSNV 283
++M +V
Sbjct: 587 MNMESV 592
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.7 bits (66), Expect = 5.6
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 715 RDVKKAVEEENKLNAHVFGQLDNRSQSISEISVNTSEPMYDNTSNPGPLTIQVRGSPIET 774
+D + EE++ + R + I + V +S D+TS+ ++ + + +E
Sbjct: 86 KDESSSEEEDDSSSDEEIAPAKKRPEPIKKAKVESSSSDDDSTSDEETAPVKKQPAVLEK 145
Query: 775 RRKIKDDFDPDTLDRKPKHEVKKR---VEKILLKSAGSFKCKSTPSENDTYKKSPQMAIT 831
+ D D+ + VKK+ +EK ++S+ S S+ E KK Q A+
Sbjct: 146 AKVESSSSDDDSSSDEETVPVKKQPAVLEKAKIESSSSDDDSSSDEETVPMKK--QTAVL 203
Query: 832 QK 833
+K
Sbjct: 204 EK 205
>At5g48240.1 68418.m05960 hypothetical protein
Length = 339
Score = 30.3 bits (65), Expect = 7.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 776 RKIKDDFDPDTLDRKPKHEVKKRVEKILLKSAGSFKCKSTPSENDTYKKSPQMAITQKI 834
R K P T DR +V + +K+ K A + E+D KK P++ I +KI
Sbjct: 31 RNKKQKSKPSTSDR---FKVTMKNQKLFQKRARDYNSDDDEEEDDESKKQPEVTIREKI 86
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative /
CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 30.3 bits (65), Expect = 7.4
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 989 KMNFPEHSPA-----AIVRTVTKAPVTQVESDTDDLESLCD-GRSESGGESVETDSVFFG 1042
K FP SPA A+ R P + E +D E + D G GGE ++ + F
Sbjct: 78 KWPFPPPSPAKPIMAALRRRRGAPPQPRDEPIPEDSEDVVDHGGDSGGGERLDKNFGFGK 137
Query: 1043 NFDDSKEMLAELGLNNF 1059
NF+ E+ E+G +F
Sbjct: 138 NFEGKYELGKEVGRGHF 154
>At1g52290.1 68414.m05900 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 509
Score = 30.3 bits (65), Expect = 7.4
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 226 LESLAIGVCVLMLIFVYAAGIIFYIHYKQRQKK--KQKDVEQNMSDNGSAMEPRLDMSNV 283
L L GV VL FV IF YK++++K K+K + S N +++P+ D +N+
Sbjct: 60 LTGLITGV-VLGATFVLLGVCIFVCFYKRKKRKLKKKKKEDIEASINRDSLDPKDDSNNL 118
Query: 284 MMKTNPLLKLNGMGNDFFNSENTMSDGSENMDGT 317
++ + +G + F E+ +S + N T
Sbjct: 119 QQWSS-----SEIGQNLFTYED-LSKATSNFSNT 146
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,711,922
Number of Sequences: 28952
Number of extensions: 966060
Number of successful extensions: 2443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2441
Number of HSP's gapped (non-prelim): 10
length of query: 1101
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1012
effective length of database: 9,493,832
effective search space: 9607757984
effective search space used: 9607757984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
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