Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
(162 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub... 113 1e-26
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 27 1.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 2.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 5.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 5.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 5.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 7.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 24 9.6
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 24 9.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 24 9.6
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 24 9.6
>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 113 bits (272), Expect = 1e-26
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 3 DDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQF-GDKPSEKRPARSDLIVL 61
++ +++R KT QL HDRGY V+Q ELD TL+QFK G + R S
Sbjct: 4 EEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLS--FYA 61
Query: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 121
ND +++ F E +GIK ++T+ + + N I++ M+PSA + + +
Sbjct: 62 KPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATV 121
Query: 122 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
++ +E F ES+L++NIT HELVP+HI+L+PDEK+ELL R
Sbjct: 122 TGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 94 MQEENIHRAIV--VVQAGMSP--SAKQSLVDMAPKYILEQFLE 132
+ + N+HR I+ + GM SAKQ L D+ P I+ +LE
Sbjct: 78 VDKSNLHRQIIHSTSKQGMHKAISAKQFLEDLNPNVIINTYLE 120
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 29 TQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL---------VAHNDDPTDQMFVFFPDE 79
++DELD++ + +EQ K E + S L + + N + + D+
Sbjct: 738 SKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDK 797
Query: 80 AKIGIKTIKTYCTRMQEENIH 100
K + +++ + +Q++N H
Sbjct: 798 LKADLSNLESKLSSLQQDNFH 818
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 33 LDQTLEQFKEQFGDKPSEKRPARSDLI-VLVAHNDDPTDQM 72
LD+ L++ KE D EK DL+ LV +ND+ D +
Sbjct: 914 LDRLLQKVKEHSEDNTKEKHQQLLDLLESLVGNNDNLIDSI 954
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 5.5
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 110 MSPSAKQSLVDMAPK------YILEQFLESELL---INITEHELVPEHIVLTPDEKQELL 160
+S + ++S D AP+ +++E + +L+ +N+ E +L P +LT +E ELL
Sbjct: 229 VSTTKRRSRWDKAPENFTISEHVIENGISEDLINKEVNVVEEKLRPPVRLLTEEELNELL 288
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 7 TYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQ 43
T KL++++ +C +RG L +E+ Q E F Q
Sbjct: 1024 TSKLFQLKSEANSICINRGLLEQLNEVLQKSENFHTQ 1060
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 5.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 11 WRIRKTVMQLCHDRGYLVTQD 31
W +TV +LC +GY V +D
Sbjct: 211 WTWEQTVRELCDAKGYYVMKD 231
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 49 SEKRPARSDLIVL--VAHNDDPTDQMFVFFPDE 79
SE++P SD L +AH++D D FF DE
Sbjct: 776 SEEKPMFSDEENLSEIAHSEDEFDDTVDFFEDE 808
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 84 IKTIKTYCTRMQEENI---HRAIVVVQAGMSPSAKQSLVDMA 122
I T YC +Q+ENI R +V Q + A QS ++++
Sbjct: 121 IVTFSEYCGSLQKENILVRARNFLVFQGDVETIASQSPLELS 162
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 1 MDDDAE-TYKLWRIRKTVMQL--CHDRG 25
M + AE ++W+IR+ V QL CH G
Sbjct: 1 MSETAEKAIEIWKIRRLVKQLINCHGNG 28
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 9.6
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 70 DQM-FVFFPDE-AKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
DQ+ +V PDE A+ I + T + E+ RA+ G S + + +V A K +
Sbjct: 659 DQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAI 718
Query: 128 EQFLESELLINITEHELVPEHIVLTPD 154
+ +E ++ E + +V+ D
Sbjct: 719 KDSIEEDIKRENETGEAPADDVVMDED 745
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 27 LVTQDELDQTLEQFKEQFGDKPSEKRP 53
+ ++EL++ +E++K++FG+ S P
Sbjct: 158 IADREELEKRVEEYKKKFGEDESVPVP 184
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,724
Number of Sequences: 5004
Number of extensions: 30168
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -