Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
(162 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and... 288 4e-77
UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and... 272 2e-72
UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa s... 158 5e-38
UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2; ... 139 3e-32
UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1; ... 128 6e-29
UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (R... 124 1e-27
UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase... 122 5e-27
UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa ... 122 5e-27
UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and... 119 4e-26
UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and... 116 2e-25
UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1... 110 2e-23
UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa s... 104 1e-21
UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa s... 101 1e-20
UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa ... 95 7e-19
UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain ... 92 5e-18
UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain ... 85 9e-16
UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA polym... 83 2e-15
UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like prote... 79 4e-14
UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2; ... 79 4e-14
UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep: Tcc... 75 8e-13
UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA polym... 72 7e-12
UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 69 4e-11
UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1; Bige... 64 2e-09
UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113, w... 57 2e-07
UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia intesti... 54 2e-06
UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1; Arabi... 52 5e-06
UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putati... 47 2e-04
UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella... 46 4e-04
UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putativ... 41 0.012
UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain ... 40 0.035
UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain ... 39 0.047
UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putativ... 36 0.33
UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia intest... 35 0.76
UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1; ... 35 0.76
UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2; ... 35 1.0
UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2; ... 34 1.8
UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Re... 34 1.8
UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:... 34 1.8
UniRef50_Q3D6E5 Cluster: Putative uncharacterized protein; n=1; ... 33 3.1
UniRef50_UPI00015BAF4A Cluster: hypothetical protein Igni_0385; ... 33 4.1
UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in chr... 33 4.1
UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance pro... 33 4.1
UniRef50_Q3JDR2 Cluster: TPR repeat protein precursor; n=1; Nitr... 32 5.4
UniRef50_Q2BEJ7 Cluster: Putative uncharacterized protein; n=1; ... 32 5.4
UniRef50_A3HNI0 Cluster: Phage tail tape measure protein, lambda... 32 5.4
UniRef50_Q4S9K7 Cluster: Chromosome undetermined SCAF14696, whol... 32 7.1
UniRef50_Q3LBN3 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_A5L2E4 Cluster: Restriction endonuclease S subunit; n=1... 32 7.1
UniRef50_Q87IC9 Cluster: Fatty acid cis/trans isomerase; n=5; Vi... 31 9.4
UniRef50_A1ARB9 Cluster: Putative uncharacterized protein; n=1; ... 31 9.4
UniRef50_A0M721 Cluster: Secreted protein; n=1; Gramella forseti... 31 9.4
UniRef50_Q8LPA6 Cluster: Malate synthase-isocitrate lyase; n=1; ... 31 9.4
>UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=16; Eumetazoa|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Homo
sapiens (Human)
Length = 210
Score = 288 bits (707), Expect = 4e-77
Identities = 132/162 (81%), Positives = 147/162 (90%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLAR
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=32; Eukaryota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Caenorhabditis elegans
Length = 211
Score = 272 bits (667), Expect = 2e-72
Identities = 122/161 (75%), Positives = 144/161 (89%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 121
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 122 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLAR
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLAR 163
>UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=2; Arabidopsis thaliana|Rep: RNA polymerase
I, II and III 24.3 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 205
Score = 158 bits (384), Expect = 5e-38
Identities = 75/159 (47%), Positives = 109/159 (68%), Gaps = 5/159 (3%)
Query: 4 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
+ E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 58
Query: 64 HNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAP 123
+D +DQ+++FFPDEAK+G+KT+K Y RM+ EN+ RAI+VVQ ++P A+ + +++
Sbjct: 59 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 118
Query: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
K+ LE F E+E+L+NI EH LVPEH VLT +EK+ LL R
Sbjct: 119 KFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157
>UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 227
Score = 139 bits (336), Expect = 3e-32
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 5/154 (3%)
Query: 9 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
+L RIR+TVMQ+ DRGYLV + EL F ++G+ R DL++ +DP
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68
Query: 69 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 128
+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK LE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128
Query: 129 QFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
F E+ELLINI EH LVPEH VL +EK+ LL R
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLER 162
>UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 554
Score = 128 bits (309), Expect = 6e-29
Identities = 61/162 (37%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
M+DD ET +LWR+ +T+ +L DRGY V DE+ LE FK ++ P+ R+ L
Sbjct: 1 MEDDRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYA--PTGGSVDRNKLNF 58
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
H + ++FVF+ + +G+KT++ + + M+E +I R I++ M+ +A++ +
Sbjct: 59 FTEHGEHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDA 118
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
M + LE F E+ LL+NIT H LVP+H L P+EK+ELL R
Sbjct: 119 MRGTFHLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
>UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (RPB5
homologue), putative; n=11; Aconoidasida|Rep:
DNA-directed RNA polymerase, subunit (RPB5 homologue),
putative - Theileria annulata
Length = 205
Score = 124 bits (299), Expect = 1e-27
Identities = 63/160 (39%), Positives = 104/160 (65%), Gaps = 5/160 (3%)
Query: 4 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
D E +L+R R+T ++ DRGY + E +T +FK ++ + +K RS ++++ +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARY--EMYDK--VRSKMLLVAS 57
Query: 64 HNDDPTDQMFVFFPDEAK-IGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMA 122
+++ V+F DE K G+K I+ RM++ +IHRAI+V Q ++P AK ++++
Sbjct: 58 LRTAAENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAY 117
Query: 123 PKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
PK I+E F+E+ELL+NIT+HELVP+HI LT +EKQ LL +
Sbjct: 118 PKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157
>UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase
(RNA) II (DNA directed) polypeptide E, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
Polymerase (RNA) II (DNA directed) polypeptide E,
partial - Ornithorhynchus anatinus
Length = 157
Score = 122 bits (293), Expect = 5e-27
Identities = 55/66 (83%), Positives = 57/66 (86%)
Query: 14 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 73
R QLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL VLVAHNDDPTDQMF
Sbjct: 46 RNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 105
Query: 74 VFFPDE 79
VFFP E
Sbjct: 106 VFFPGE 111
>UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 221
Score = 122 bits (293), Expect = 5e-27
Identities = 61/166 (36%), Positives = 101/166 (60%), Gaps = 9/166 (5%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPS---------EKRPARS 56
E +LWR+ +TV ++ DRGYL+ E++ + E+FK++ G S +K +RS
Sbjct: 8 ELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRS 67
Query: 57 DLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
++ H +D TD++FV+F + + ++KT+ M + R I++ MSP+AK+
Sbjct: 68 NMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKK 127
Query: 117 SLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
+L +M +Y LE F ES+LL+NIT+H LVP+H V+ P+EK L+ R
Sbjct: 128 TLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKR 173
>UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=14; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Ashbya
gossypii (Yeast) (Eremothecium gossypii)
Length = 215
Score = 119 bits (286), Expect = 4e-26
Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 17/171 (9%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
D++ +LWR +TV ++ DRGY +TQ+E+D +LE FK ++ D S RP R +
Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK----M 57
Query: 62 VAHNDDPTDQ----------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMS 111
++ +PT++ ++V F DE +GIKT+K + + E+N I + Q G++
Sbjct: 58 MSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGIT 117
Query: 112 PSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
PSA + L +AP I E F E+ L++NIT HELVP+HI L+ +EK+ELL R
Sbjct: 118 PSALKLLPSVAPATI-ETFNETALVVNITHHELVPKHIKLSDEEKKELLKR 167
>UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=13; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 215
Score = 116 bits (280), Expect = 2e-25
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
+++ +LWR +TV ++ DRGY +TQ+E++ LE FK ++ D S RP R +
Sbjct: 4 ENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRKMMSFQ 61
Query: 62 VAHNDDPTDQ------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAK 115
++ + ++V F DE +G+KT+KT+ +QE+N I V Q ++PSA
Sbjct: 62 ANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAM 121
Query: 116 QSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
+ LV P +E F E+ L++NIT HELVP+HI L+ DEK+ELL R
Sbjct: 122 K-LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKR 167
>UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase
subunit Rpb5 - Entamoeba histolytica HM-1:IMSS
Length = 204
Score = 110 bits (264), Expect = 2e-23
Identities = 58/162 (35%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
M+ Y+ W KTV+++ DRGY+ ++++ + TLE FKE+F K E + +L +
Sbjct: 1 MESVTHIYRAW---KTVLEMLRDRGYITSEEDHNTTLEGFKERFY-KGGEGVDHK-ELTI 55
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
V +D TD + VFF + + + Y T ++ E++ RAI+V + +S KQ +++
Sbjct: 56 KVVKENDATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MME 114
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
+ E LE EL++N+T H LVP+HI+L+P+EKQELL +
Sbjct: 115 QPREVKWEALLEDELIVNVTHHILVPQHILLSPEEKQELLKK 156
>UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit-like protein; n=1; Arabidopsis thaliana|Rep: RNA
polymerase I, II and III 24.3 kDa subunit-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 210
Score = 104 bits (249), Expect = 1e-21
Identities = 51/160 (31%), Positives = 97/160 (60%), Gaps = 3/160 (1%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
D D E +++++R+TV+Q+ DRGY + + +L+ E+F ++F ++ + L V
Sbjct: 3 DMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVN--KEALFVS 60
Query: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
+P D+++VF+P+ K+G+ IK +M+++ +HR IVVV ++ A+ ++ +
Sbjct: 61 ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
+ +E F E+EL+ NITEH+LV ++ VL K++LL
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLL 160
>UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=1; Guillardia theta|Rep: RNA polymerase I, II
and III 24.3 kDa subunit - Guillardia theta (Cryptomonas
phi)
Length = 214
Score = 101 bits (241), Expect = 1e-20
Identities = 53/169 (31%), Positives = 101/169 (59%), Gaps = 10/169 (5%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLV--TQDELDQTLEQFKEQFGDKPSEKRPARSDL 58
M+DD L+++R+TV+Q+ DRGY+V ++D+L+ + F+E + R L
Sbjct: 1 MNDDKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFY---MKNHAICRKSL 57
Query: 59 IVLVAHNDDPTDQMFVFF----PDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSA 114
+ D+P +++ + F D+ IG+K+I+ +C R++ E R ++++ ++P A
Sbjct: 58 EIKRPRWDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHA 117
Query: 115 KQSLVDM-APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
KQ++ + + ++E F E+EL++NIT H LVP+H +L+ +E + LL R
Sbjct: 118 KQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLER 166
>UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa
polypeptide; n=1; Aspergillus terreus NIH2624|Rep:
DNA-directed RNA polymerases II 24 kDa polypeptide -
Aspergillus terreus (strain NIH 2624)
Length = 219
Score = 95.1 bits (226), Expect = 7e-19
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
+D D E +LWR +TV ++ DR Q L + K + +P+E + +
Sbjct: 10 VDADREMTRLWRTWRTVFEMLQDRPS--PQRILLTLASRAKMKIQARPTEAMQVKYTPLT 67
Query: 61 LVAHNDDPTD--QMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQS 117
+ P D ++V F PD + +G K ++ + + E N H I + Q +SPSA +
Sbjct: 68 KQGQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVR- 126
Query: 118 LVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
L+ P I E F E +LL+NIT HELVP+H++L+P+EK+ LL R
Sbjct: 127 LLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDR 171
>UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein, expressed; n=5; Oryza sativa|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein, expressed - Oryza sativa subsp. japonica (Rice)
Length = 335
Score = 92.3 bits (219), Expect = 5e-18
Identities = 48/155 (30%), Positives = 97/155 (62%), Gaps = 6/155 (3%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
E+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 191
Query: 66 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 125
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 192 SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 250
Query: 126 ILEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
++ F ++LL+NIT+H L P+H VL+ D+K +LL
Sbjct: 251 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLL 285
>UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 202
Score = 84.6 bits (200), Expect = 9e-16
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 11 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTD 70
+RI T+ Q+ DRGY V L+ + ++F + + P S++ +
Sbjct: 10 FRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHNLNECYSNM---------EGE 60
Query: 71 QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAG-MSPSAKQSLVDMAPK-YILE 128
++ FF ++ KTI+T M E ++RAIV+ G ++P+A ++L ++ +E
Sbjct: 61 RILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIE 120
Query: 129 QFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
F E++INITEHELVP+H VLT DEKQE+L R
Sbjct: 121 FFSFDEVIINITEHELVPKHEVLTEDEKQEVLKR 154
>UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=2; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 224
Score = 83.4 bits (197), Expect = 2e-15
Identities = 54/162 (33%), Positives = 97/162 (59%), Gaps = 12/162 (7%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
+ + ET + + RKT+M + HDRGY V++ +L +L +F+ +FG+ P +P L V
Sbjct: 22 ESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFP---KP--HTLGVS 76
Query: 62 VAHNDDPTDQMFVFFP---DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSL 118
V+ +P+ ++ V FP D K + I++ + +E + R I+V+Q+ M+ A++ L
Sbjct: 77 VSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQI--VDKERLSRLILVMQSKMTSYARKEL 134
Query: 119 VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
+ K + Q ++LL+N+T+H L P++ VLT +EKQ+LL
Sbjct: 135 ENCPFKVEIIQL--NDLLVNVTKHVLQPKYEVLTANEKQKLL 174
>UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like protein;
n=2; core eudicotyledons|Rep: RNA polymerase 24kDa
subunit-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 233
Score = 79.4 bits (187), Expect = 4e-14
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
E+ + + R T ++ DRGY V + EL TL +F+ FG+KP +R L + V
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELER-----LRICVPLR 89
Query: 66 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEE-NIHRAIVVVQAGMSPSAKQSLVDMAPK 124
DP ++ V F I +K+++ ++ +H I+V+Q+ M+ A+++L
Sbjct: 90 SDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--P 147
Query: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
+ +E F +LL+NIT+H P+ +L +EK++LL +
Sbjct: 148 FTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRK 185
>UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 259
Score = 79.4 bits (187), Expect = 4e-14
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 17/171 (9%)
Query: 9 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPAR-------SD-LIV 60
KLWR +T+ Q+ DRGY ++++E + ++E+F F D ++ SD ++
Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71
Query: 61 LVAHNDDPTD--------QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSP 112
L A PTD ++V F +E KIG+ K + + + I+V Q +S
Sbjct: 72 LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131
Query: 113 SAKQSL-VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
A+++L + +E F+ +LL+NIT HELVP+H++L+ EK+ LL R
Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLER 182
>UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep:
Tcc44h21-2.4 - Trypanosoma cruzi
Length = 219
Score = 74.9 bits (176), Expect = 8e-13
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 9 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAH-NDD 67
K++R+ +TV ++ DR Y V + ++E+FK+ + D P E R + V
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD-PREGVIYRDRMTVPCERIGVS 75
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI- 126
+ VFF + + ++T+K Y T+ E N R I+VVQ ++ K+ + D+ +
Sbjct: 76 QRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLG 133
Query: 127 --LEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
++ F E +L++NIT HELVP+H L +E +E+L
Sbjct: 134 LKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEML 169
>UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=7; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 248
Score = 71.7 bits (168), Expect = 7e-12
Identities = 42/158 (26%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
E+++ + R+TV+++ DRGY + DE+ +L+ F++ G P R L + H
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDR-----LRLTATHA 104
Query: 66 DDPTDQMFVFFPDEAKIGIKTIKTYCTR-MQEENIHRAIVVVQAGMSPSAKQSLVDMAPK 124
+P+ ++ V F + + ++ + + E++ I++VQ ++ A +++ ++ K
Sbjct: 105 TNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFK 164
Query: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
+E F ++LL+N T+H L P+H VLT +K+ LL +
Sbjct: 165 --VEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKK 200
>UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 212
Score = 69.3 bits (162), Expect = 4e-11
Identities = 43/146 (29%), Positives = 81/146 (55%), Gaps = 10/146 (6%)
Query: 14 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 73
R T +++ DRGY TQ+ L L+ F E++ ++ RS L + + D P +
Sbjct: 22 RNTAIEMVRDRGYTTTQEVL--ALDGFHERYPLALTK----RSTLNFVCVNVDRP---VA 72
Query: 74 VFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLES 133
V F D+ K+G K + ++ +++N+ I+++ SP+ S++ + P++ +E FL
Sbjct: 73 VHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTV-MSMIPLTPRFSIEIFLVE 131
Query: 134 ELLINITEHELVPEHIVLTPDEKQEL 159
EL+ N T+H VP H VL+ +E++ +
Sbjct: 132 ELIFNKTKHSWVPPHRVLSREERESV 157
>UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1;
Bigelowiella natans|Rep: RNA polymerase I, II and III -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 204
Score = 63.7 bits (148), Expect = 2e-09
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 9 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
K + ++ ++ + RGY V + L+ QFK++ +K KR +S ++ H +D
Sbjct: 8 KYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEK---KRYFKS--FKIINHLNDT 62
Query: 69 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 128
+++ F+ ++ I + + + + N + I + + +S +L + +E
Sbjct: 63 NNKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIE 122
Query: 129 QFLESELLINITEHELVPEHIVLTPDEKQELL 160
F E E+LIN +H LVP+H++L PD K+++L
Sbjct: 123 IFFEYEILINPIKHFLVPKHVLLAPDIKRKIL 154
>UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113,
whole genome shotgun sequence; n=3; cellular
organisms|Rep: Chromosome undetermined scaffold_113,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 224
Score = 57.2 bits (132), Expect = 2e-07
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 21/175 (12%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDEL---DQTLEQFKEQFGDKPSEKRPARSDL 58
+D A K +++ +T+ + RGY + D+ E F+ ++ ++ P R
Sbjct: 9 EDKASIKKKYKVFQTLASMIRQRGYFEANPPILIEDEPFELFEAKYR---TDVLPQR--- 62
Query: 59 IVLVAHNDDPTDQMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQS 117
V+ +D TD+M + F+ + + K Y + + + R I+V + Q
Sbjct: 63 -VVCFKKEDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQV 121
Query: 118 L----------VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
+ V+ Y E F E +L+ ++T+HELVP+HI+L EK+ LL +
Sbjct: 122 VEKKARFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKK 176
>UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia
intestinalis|Rep: GLP_738_3930_4619 - Giardia lamblia
ATCC 50803
Length = 229
Score = 53.6 bits (123), Expect = 2e-06
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 7 TYKLWRIRKTVMQLCHDRGYLVTQDE---------LDQTLEQFKEQFGDKPSEKRPARSD 57
T + +++R+TV+++ DRGY+V D+ L+QT + F +F P + +
Sbjct: 7 TAESFKVRRTVIEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTH 66
Query: 58 LIVLVAHNDDPTDQMFVF-FPDEAKIGIKTIKTYCTRMQEENIHRAIVVV--QAGM---S 111
+ + N + + V P K I +K + + R I V+ + G S
Sbjct: 67 KLRKSSANSLNQETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDS 126
Query: 112 PSAK-QSLVDMAPK---YILEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
P+ Q+ +D A + ++E FL + LLINIT+H LVP+H++L+ EK +L
Sbjct: 127 PNKTIQARIDEAQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVL 179
>UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1;
Arabidopsis thaliana|Rep: RNA polymerase-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 52.4 bits (120), Expect = 5e-06
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 101 RAIVVVQAGMSPSAKQSLVDMA---PKYILEQFLESELLINITEHELVPEHIVLTPDEKQ 157
RAI+VVQ + ++Q+LV + P + +E F E EL++N+ EH VPEH LT +EKQ
Sbjct: 67 RAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQ 125
Query: 158 ELLAR 162
+ L R
Sbjct: 126 KFLER 130
Score = 47.6 bits (108), Expect = 1e-04
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 4 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGD 46
D E +L+ +++T+MQ+ DRGYL+ E+ TLE+F E++GD
Sbjct: 5 DEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGD 47
>UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerases II,
putative - Leishmania major
Length = 239
Score = 46.8 bits (106), Expect = 2e-04
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK------------------ 47
E +K +RI +T ++ DR Y V Q + +L +F E++ ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69
Query: 48 -PSEKRPARSDLIVLVAHND---DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAI 103
P K+ R D + L + T + V+F + + +K E R +
Sbjct: 70 LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129
Query: 104 VVVQAGMSPSAKQSL--VDMAPKYI-LEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
V + +P ++++ + + + + E F E EL +NIT HELVP+H L+ +E +++L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189
>UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella
nidulans|Rep: RNA polymerase subunit - Emericella
nidulans (Aspergillus nidulans)
Length = 117
Score = 46.0 bits (104), Expect = 4e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK 47
D + ET ++WR +TV ++ DRGY VT++E+ L++FK ++ K
Sbjct: 21 DAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYAVK 66
>UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerase II,
putative - Leishmania major
Length = 342
Score = 41.1 bits (92), Expect = 0.012
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY------ 125
+ VFF K+ +K + ++ + ++ IVV + P + + +++ +
Sbjct: 196 LMVFFSGSPKLSMKEVHSFREKALKKKASSMIVVTNK-IDPGVRMDVQELSGRMDEATGA 254
Query: 126 ---ILEQFLESELLINITEHELVPEHIVLTPDEKQELLA 161
++ F E L N+ HE VP H+ LTP E + LA
Sbjct: 255 ELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLA 293
Score = 33.5 bits (73), Expect = 2.3
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 3 DDAETYKLWRIRKTVMQLCHDRGYLV 28
++ + +L+R T++QLCHDRGY++
Sbjct: 5 EELKVVRLFRALNTMIQLCHDRGYVI 30
>UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb5, C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 275
Score = 39.5 bits (88), Expect = 0.035
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
Y E F +L+INIT+H+LVP+H+ L EK++L+
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLM 225
>UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, C-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 217
Score = 39.1 bits (87), Expect = 0.047
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 65 NDDPTDQMFVFFPDEAKIGIKTIKT----YCTRMQEENIHRAIVVVQAGMS---PSAKQS 117
N+ T+ + + F K+ KT K Y T + H +V + ++ K+
Sbjct: 67 NNTTTEALAIVFDFRDKLTHKTFKEDYFKYYTNADKPITHLILVHQEGSLAHIFDRIKKQ 126
Query: 118 LVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
L + K LE F EL NIT H VP+H VL+ +EK EL R
Sbjct: 127 LRLIGKK--LETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNR 169
>UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
II, putative - Trypanosoma cruzi
Length = 282
Score = 36.3 bits (80), Expect = 0.33
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 132 ESELLINITEHELVPEHIVLTPDEKQELL 160
E EL NI HE VP+H VL+P+E Q L
Sbjct: 204 EDELAYNIARHETVPQHEVLSPEEAQLFL 232
>UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia
intestinalis|Rep: GLP_25_26771_27376 - Giardia lamblia
ATCC 50803
Length = 201
Score = 35.1 bits (77), Expect = 0.76
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 133 SELLINITEHELVPEHIVLTPDEKQELLA 161
S+ LIN T+H LVP+H +L+ EK +LA
Sbjct: 124 SQFLINPTKHRLVPKHTILSNTEKARVLA 152
>UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 902
Score = 35.1 bits (77), Expect = 0.76
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQ----DELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
ET + ++K V +L D LV + D+L + +EQ+ FGD EK R D+I
Sbjct: 671 ETSEYKDVKKAVKKLYRDHCELVKENEEKDKLLKEIEQWYRDFGDFHDEKLSIR-DMIKE 729
Query: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRM 94
+ + ++P +M++ +E+K +T+ R+
Sbjct: 730 LDNRENPLTKMYMDVSNESKTVKETLVICAQRL 762
>UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 246
Score = 34.7 bits (76), Expect = 1.0
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 105 VVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 160
+V+ S + L+D+ I E+ LES L IN + ++ P+ +LTPDE+ L
Sbjct: 123 LVEFAESKDLMEMLLDINKDSINEKKLESYLKINDDDPDITPDRNMLTPDERSRRL 178
>UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2;
Ehrlichia ruminantium|Rep: Putative uncharacterized
protein - Ehrlichia ruminantium (strain Gardel)
Length = 521
Score = 33.9 bits (74), Expect = 1.8
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 94 MQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH--ELVPEHI-V 150
++++N+H+ I + + L+ +A KYI++ L +IT+H L P+HI V
Sbjct: 430 IKDKNLHKTIHELLGTQQQVSCHELIKLARKYIMDSCLPHMQFYSITQHTINLNPKHITV 489
Query: 151 LTPD 154
TP+
Sbjct: 490 FTPE 493
>UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Rep:
SEC14-like protein 5 - Homo sapiens (Human)
Length = 756
Score = 33.9 bits (74), Expect = 1.8
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 97 ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEK 156
EN R ++ +G + LVD + ++ FL E + N+ E LVP+ + +T +E+
Sbjct: 501 ENTRRKFLIY-SGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQ 559
Query: 157 Q 157
+
Sbjct: 560 E 560
>UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:
Oligophrenin 1 - Homo sapiens (Human)
Length = 802
Score = 33.9 bits (74), Expect = 1.8
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>UniRef50_Q3D6E5 Cluster: Putative uncharacterized protein; n=1;
Streptococcus agalactiae COH1|Rep: Putative
uncharacterized protein - Streptococcus agalactiae COH1
Length = 99
Score = 33.1 bits (72), Expect = 3.1
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 70 DQMFVFFPDE-AKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 128
D M + FP+ A+ IK K + E NI V+Q G SP L ++AP I+E
Sbjct: 26 DLMKIGFPENTAREIIKQAKAIAVQRFENNIQETGKVIQLGQSPFDNVRL-NLAPASIVE 84
Query: 129 QFLESEL 135
+ L EL
Sbjct: 85 ELLGFEL 91
>UniRef50_UPI00015BAF4A Cluster: hypothetical protein Igni_0385;
n=1; Ignicoccus hospitalis KIN4/I|Rep: hypothetical
protein Igni_0385 - Ignicoccus hospitalis KIN4/I
Length = 183
Score = 32.7 bits (71), Expect = 4.1
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 26 YLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
Y+ T++EL++ E+ +E+FG +K R DL +LV+ DP
Sbjct: 49 YVETKEELERAREELEERFGSAIVQK-AVRGDLELLVSSKRDP 90
>UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in
chromosome partitioning; n=1; Nostoc punctiforme PCC
73102|Rep: COG1192: ATPases involved in chromosome
partitioning - Nostoc punctiforme PCC 73102
Length = 503
Score = 32.7 bits (71), Expect = 4.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 11 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 66
W R ++ +C D+GY + Q E D TL +++ K E+ + ++ V D
Sbjct: 443 WIPRLNIVSICQDKGYPLYQGEFDNTLVSQEKEAAQKVLERYTNLAQHLIKVTTGD 498
>UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance
protein; n=28; Magnoliophyta|Rep: TIR-NBS-LRR type
disease resistance protein - Populus trichocarpa
(Western balsam poplar) (Populus balsamiferasubsp.
trichocarpa)
Length = 1617
Score = 32.7 bits (71), Expect = 4.1
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 23 DRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKI 82
DRGY V EL ++L +F+ FG+ P L ++ +P ++ V F +I
Sbjct: 4 DRGYDVADTELTRSLMEFRSIFGNCPD-----LDSLRFSISLRSNPYNKNLVIFMGTDEI 58
Query: 83 GIKTIK-TYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
I+ Y + +E+ I+++Q+ M+ AK+
Sbjct: 59 RTANIRAVYGQILSKESRQGLILILQSKMNHFAKK 93
>UniRef50_Q3JDR2 Cluster: TPR repeat protein precursor; n=1;
Nitrosococcus oceani ATCC 19707|Rep: TPR repeat protein
precursor - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 581
Score = 32.3 bits (70), Expect = 5.4
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 94 MQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE----QFLESELLINITEHELVPEH- 148
M + + +A+V Q G P+A+Q L ++ K+ + Q E E+LIN +E H
Sbjct: 364 MVDAQVRQAVVTAQQGNLPAARQHLQLLSRKFPTQADRFQLAEGEILINAGRYEEAMSHY 423
Query: 149 ---IVLTPDEKQELLAR 162
+ PD+ L AR
Sbjct: 424 DNALHSRPDDTNLLYAR 440
>UniRef50_Q2BEJ7 Cluster: Putative uncharacterized protein; n=1;
Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
protein - Bacillus sp. NRRL B-14911
Length = 312
Score = 32.3 bits (70), Expect = 5.4
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 38 EQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP-DEAKIGIKTIKTYCTRMQE 96
E + E D+ K P R L V + DDPTD V +P D KI + + T R+++
Sbjct: 209 ETYLETELDERLAKGPVRFTLSVQLGEKDDPTDDPTVLWPGDRQKIAVGEL-TVNRRLED 267
Query: 97 EN 98
N
Sbjct: 268 SN 269
>UniRef50_A3HNI0 Cluster: Phage tail tape measure protein, lambda
family; n=1; Pseudomonas putida GB-1|Rep: Phage tail
tape measure protein, lambda family - Pseudomonas putida
(strain GB-1)
Length = 908
Score = 32.3 bits (70), Expect = 5.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 23 DRGYLVTQDELDQTLEQFKEQFGDKPSEKRPA 54
D G + T+ EL+Q + +EQF DKP K PA
Sbjct: 447 DGGRVYTEAELNQLRDAAREQFKDKPVHKGPA 478
>UniRef50_Q4S9K7 Cluster: Chromosome undetermined SCAF14696, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14696,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 719
Score = 31.9 bits (69), Expect = 7.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 89 TYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEH 148
T + + +EN + ++ AG LVD K I+ FL E + ++ E LVP+
Sbjct: 477 TLVSPLIDENTRKKFLIF-AGNDYQGPGGLVDYMDKEIIPDFLGGECMCDVPEGGLVPKS 535
Query: 149 IVLTPDE 155
+ T +E
Sbjct: 536 LYRTAEE 542
>UniRef50_Q3LBN3 Cluster: Putative uncharacterized protein; n=1;
Candidatus Phytoplasma solani|Rep: Putative
uncharacterized protein - Candidatus Phytoplasma solani
Length = 133
Score = 31.9 bits (69), Expect = 7.1
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 4 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKE 42
+ E+ + I+KT++++ D+ YL T+ ++D L+Q K+
Sbjct: 56 EIESNSDYLIKKTILKIFKDKNYLATKKKVDDLLKQIKK 94
>UniRef50_A5L2E4 Cluster: Restriction endonuclease S subunit; n=1;
Vibrionales bacterium SWAT-3|Rep: Restriction
endonuclease S subunit - Vibrionales bacterium SWAT-3
Length = 585
Score = 31.9 bits (69), Expect = 7.1
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQT----LEQFKEQFGDKPSEKRPARSDLIVL 61
E Y + ++R+ +++L RG LV QD D+ LE+ E+ EK+ +S +
Sbjct: 38 ELYGVKKLRELILELAV-RGKLVPQDPTDELASVLLERIAEEKAQLVKEKKIKKSKSLSK 96
Query: 62 VAHNDDP 68
+A+ D+P
Sbjct: 97 IANEDEP 103
>UniRef50_Q87IC9 Cluster: Fatty acid cis/trans isomerase; n=5;
Vibrio|Rep: Fatty acid cis/trans isomerase - Vibrio
parahaemolyticus
Length = 771
Score = 31.5 bits (68), Expect = 9.4
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Query: 3 DDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLV 62
DD +T L +RK + + R Y +T L E+ ++ G E + +L+
Sbjct: 590 DDPKTELLNMMRKRLSPVLLPR-YEITDTALSDKTEKELKRIGQVRGEGLQTVPQITMLM 648
Query: 63 AHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMA 122
+ D++F + A I ++ + N IV G P+A SL +
Sbjct: 649 VRSKSGKDELFTLLHNNAHTNISSLFDEESNRDFANDDMTIVRGVVGSYPAAFFSLKENQ 708
Query: 123 PKYILEQF 130
K ++QF
Sbjct: 709 VKEFVDQF 716
>UniRef50_A1ARB9 Cluster: Putative uncharacterized protein; n=1;
Pelobacter propionicus DSM 2379|Rep: Putative
uncharacterized protein - Pelobacter propionicus (strain
DSM 2379)
Length = 647
Score = 31.5 bits (68), Expect = 9.4
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 106 VQAGMSPSAKQSLVDMAPKYILEQFLE-SELLINI 139
V AG+SP AK S+VD +Y+ LE +L++NI
Sbjct: 307 VSAGISPEAKYSVVDCVAQYVENNNLELLDLVVNI 341
>UniRef50_A0M721 Cluster: Secreted protein; n=1; Gramella forsetii
KT0803|Rep: Secreted protein - Gramella forsetii (strain
KT0803)
Length = 268
Score = 31.5 bits (68), Expect = 9.4
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 26 YLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIK 85
Y+VT ++T F F K + K P D H+D +M V D+ K G
Sbjct: 188 YIVTSYLTEETNLNFASMFQSKGNPKIPKAVDAEWFKKHSDGLMLEMEVI--DKNK-GKD 244
Query: 86 TIKTYCTRMQEEN 98
+K YCT + +EN
Sbjct: 245 NMKMYCTSLSKEN 257
>UniRef50_Q8LPA6 Cluster: Malate synthase-isocitrate lyase; n=1;
Euglena gracilis|Rep: Malate synthase-isocitrate lyase -
Euglena gracilis
Length = 1165
Score = 31.5 bits (68), Expect = 9.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 22 HDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARS 56
HD ++ ++ L+QFK+ FGD P +K ++S
Sbjct: 384 HDGAWVAHPGMVEAVLDQFKKAFGDAPHQKSSSKS 418
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,471,865
Number of Sequences: 1657284
Number of extensions: 6948725
Number of successful extensions: 18912
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 18837
Number of HSP's gapped (non-prelim): 57
length of query: 162
length of database: 575,637,011
effective HSP length: 95
effective length of query: 67
effective length of database: 418,195,031
effective search space: 28019067077
effective search space used: 28019067077
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 68 (31.5 bits)
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