BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like, IPR005571|RNA polymerase Rpb5, N-terminal (162 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46 SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9) 29 1.4 SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4 SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9) 29 1.9 SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 29 1.9 SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2) 29 2.4 SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3 SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1) 28 4.3 SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3 SB_13013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3 SB_11460| Best HMM Match : Pkinase (HMM E-Value=0) 28 4.3 SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6 SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6 SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6 SB_58631| Best HMM Match : DUF548 (HMM E-Value=3.7) 27 5.6 SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5) 27 5.6 SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8) 27 5.6 SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) 27 5.6 SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6 SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065) 27 5.6 SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 27 7.5 SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5 SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22) 27 7.5 SB_11712| Best HMM Match : Trypsin (HMM E-Value=4) 27 7.5 SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18) 27 7.5 SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 27 7.5 SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5 SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5 SB_17222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5 SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5 SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9) 27 7.5 SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5) 27 9.9 SB_31034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9 SB_5055| Best HMM Match : DUF433 (HMM E-Value=0.4) 27 9.9 SB_4632| Best HMM Match : DUF548 (HMM E-Value=4.4) 27 9.9 SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3) 27 9.9 >SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 417 Score = 31.1 bits (67), Expect = 0.46 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 78 DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLI 137 DEA K +K M++ +H A V +PSA + + K+ L+ E E+L Sbjct: 257 DEAGAANKRVKEAPIWMKQSTVHSAPEAVAQAATPSAAST----SEKHALDHSTEDEVLA 312 Query: 138 NITEHELV 145 ++ HE V Sbjct: 313 DLLAHESV 320 >SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9) Length = 499 Score = 29.5 bits (63), Expect = 1.4 Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E + H + + + G S KQ Sbjct: 218 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQ 262 >SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 531 Score = 29.5 bits (63), Expect = 1.4 Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E + H + + + G S KQ Sbjct: 318 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQ 362 >SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9) Length = 1217 Score = 29.1 bits (62), Expect = 1.9 Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFL 131 +FVF+P E + I+ Y T E H + + G + KQ+ D A L++ + Sbjct: 200 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNNGKQARADKAGLGRLDRSV 259 Query: 132 ES 133 E+ Sbjct: 260 EA 261 >SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) Length = 769 Score = 29.1 bits (62), Expect = 1.9 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 101 RAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELL-INITEHELVPEHI 149 +AIV + SP Q LVD A Y+L+ LESE + HELV ++ Sbjct: 48 KAIVRRLSLPSPPKLQILVDRAAHYVLKNTLESEYAKVKSGIHELVTMYL 97 >SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1608 Score = 29.1 bits (62), Expect = 1.9 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAK---QSLVDMAPKYILE 128 +FVF+P E + I+ Y T E H + + G S K S+VD+ + + + Sbjct: 805 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKLPIDSVVDLHNELVSD 864 Query: 129 QFLESEL 135 + +EL Sbjct: 865 YIINNEL 871 >SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 238 Score = 29.1 bits (62), Expect = 1.9 Identities = 15/45 (33%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVFFP E + I+ Y T + E H + + G S KQ Sbjct: 69 VFVFFPGEGYRNVHVIRVYDTAVDEYPSHLNLFSDEGGKYNSGKQ 113 >SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 247 Score = 29.1 bits (62), Expect = 1.9 Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 55 RSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSA 114 R+ ++V+ +FVF+P E + I+ Y T E H + + G S Sbjct: 17 RAGIVVIWCSRSHGLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSG 76 Query: 115 KQ 116 KQ Sbjct: 77 KQ 78 >SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1092 Score = 29.1 bits (62), Expect = 1.9 Identities = 15/45 (33%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T M E H + + G S KQ Sbjct: 244 VFVFYPGEGYRNVHVIRGYDTAMDEYPSHLNLFSDEGGTYKSGKQ 288 >SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2) Length = 344 Score = 28.7 bits (61), Expect = 2.4 Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 125 +FVF+P E + I+ Y T E H + + G S KQ L + + Sbjct: 227 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQQLTSITKPF 280 >SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 5222 Score = 27.9 bits (59), Expect = 4.3 Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 93 RMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 152 R +E +H+ + A ++ + K+ D+A K E E+ + +HE ++ T Sbjct: 3819 REEETAVHKLLKEQDAKLAEAMKELSEDLANKLAAGDLTEDEMRAIMDDHERQIANLATT 3878 Query: 153 PDEKQE 158 D ++E Sbjct: 3879 LDSEKE 3884 >SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1) Length = 440 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74 LC D ++T +E Q E+F E+F D P++K P R + + ++ D + Sbjct: 38 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 97 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74 LC D ++T +E Q E+F E+F D P++K P R + + ++ D + Sbjct: 294 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 353 >SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 189 Score = 27.9 bits (59), Expect = 4.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Query: 98 NIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 135 +I +AI+ Q G SPS Q + + IL+Q+L+ L Sbjct: 139 SIGKAIITFQVGSSPSFGQVRIGLKLLMILKQYLDGGL 176 >SB_13013| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 217 Score = 27.9 bits (59), Expect = 4.3 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 65 NDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 N P D +FVF+P E + I+ Y T E H + + G S KQ Sbjct: 70 NHGPGD-VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 120 >SB_11460| Best HMM Match : Pkinase (HMM E-Value=0) Length = 323 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/50 (32%), Positives = 22/50 (44%) Query: 47 KPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE 96 K + KR R I ++ P D + F P E K+ K TY T + E Sbjct: 68 KANSKRYKRDVAIKIICKKKAPEDFLTKFLPREIKVLKKIKNTYVTTLLE 117 >SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1370 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P+E + I+ Y T E H + + G S KQ Sbjct: 210 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 254 >SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1743 Score = 27.5 bits (58), Expect = 5.6 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDD 67 LC D ++T E Q E+F E+F D P++K P R + + ++ D Sbjct: 1069 LCGDLSEMITAREAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSD 1121 >SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 760 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P+E + I+ Y T E H + + G S KQ Sbjct: 669 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 713 >SB_58631| Best HMM Match : DUF548 (HMM E-Value=3.7) Length = 460 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E + H + + G S KQ Sbjct: 220 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 264 >SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5) Length = 181 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E ++ I+ Y T E H + + G S KQ Sbjct: 89 VFVFYPGEGYRNVRVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 133 >SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8) Length = 1255 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 70 DQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 D +FVF+P E + I+ Y T E H + + G + KQ Sbjct: 319 DDVFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNNGKQ 365 >SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) Length = 908 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E + H + + G S KQ Sbjct: 700 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 744 >SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1472 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E + H + + G S KQ Sbjct: 121 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 165 >SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065) Length = 1171 Score = 27.5 bits (58), Expect = 5.6 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 97 ENIHRAI-VVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIV 150 E I AI + ++ + P AK+ +MAP+Y EQ++E + +N +++ E +V Sbjct: 756 EMIKEAIDMYIEGELWPKAKRCAAEMAPRY--EQYVE-DAYVNFLKNQGQAEQLV 807 >SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) Length = 1736 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T + E H + + G S KQ Sbjct: 199 VFVFYPKEGYRNVHVIRGYNTAVDEYPSHLNLFSDEGGTYNSGKQ 243 >SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1616 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T + E H + + G S KQ Sbjct: 1540 VFVFYPGEGYRNVHVIRGYDTAVDEYPSHLNLFSDEGGTYNSGKQ 1584 >SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22) Length = 726 Score = 27.1 bits (57), Expect = 7.5 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 35 QTLEQFKEQFGDKPSEKRPARS 56 Q +Q + Q G+KPS+KRP ++ Sbjct: 85 QAAKQLRVQEGEKPSDKRPLKT 106 >SB_11712| Best HMM Match : Trypsin (HMM E-Value=4) Length = 562 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 70 DQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 D +FVF+P E + I+ Y T + H + + G S KQ Sbjct: 251 DDVFVFYPGEGYRNVHVIRGYDTAADKYPSHLNLFSDEGGTYNSGKQ 297 >SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18) Length = 659 Score = 27.1 bits (57), Expect = 7.5 Identities = 12/27 (44%), Positives = 19/27 (70%) Query: 38 EQFKEQFGDKPSEKRPARSDLIVLVAH 64 EQ+K++ K + KRP RS L V++A+ Sbjct: 259 EQYKKERKSKKNVKRPPRSALQVMIAN 285 >SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) Length = 528 Score = 27.1 bits (57), Expect = 7.5 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74 LC D ++T +E Q E F E+F D P++K P R + + ++ D + Sbjct: 347 LCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 406 >SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 745 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T + E H + ++G S KQ Sbjct: 623 VFVFYPGEGYRNVHVIRGYDTAVDEYLSHLNLFSDESGTYNSGKQ 667 >SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1041 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E ++ I+ Y T E H + + G S KQ Sbjct: 873 VFVFYPGEGYRNVQVIRGYNTAADEYPSHLNLFSDEGGTYNSGKQ 917 >SB_17222| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 554 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T +E H + + G S KQ Sbjct: 278 VFVFYPGEGYRNVHVIRGYDTAAEEYPSHLNLFSDEGGTYNSGKQ 322 >SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1246 Score = 27.1 bits (57), Expect = 7.5 Identities = 13/45 (28%), Positives = 25/45 (55%) Query: 115 KQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQEL 159 +Q + + + +EQ E L + I E E + E+ LT ++KQ++ Sbjct: 580 RQKADEWSAQEAVEQLAEQSLTVTIEEVEEIYENCPLTDEDKQKV 624 >SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9) Length = 566 Score = 27.1 bits (57), Expect = 7.5 Identities = 14/45 (31%), Positives = 20/45 (44%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E H + + G S KQ Sbjct: 455 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFTDEGGTYNSGKQ 499 >SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5) Length = 480 Score = 26.6 bits (56), Expect = 9.9 Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I++Y T E H + + G S K+ Sbjct: 202 VFVFYPGEGYSNVHVIRSYDTAADEYPSHLNLFSDEGGTYNSGKE 246 >SB_31034| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 357 Score = 26.6 bits (56), Expect = 9.9 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T + E H + + G S KQ Sbjct: 92 VFVFYPGEGYRNVHVIRGYDTAVDEYPSHFNLFSDEGGTYNSGKQ 136 >SB_5055| Best HMM Match : DUF433 (HMM E-Value=0.4) Length = 280 Score = 26.6 bits (56), Expect = 9.9 Identities = 19/77 (24%), Positives = 32/77 (41%) Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 87 VT D++ Q + + G K +E AR L +LVA + D+ K + Sbjct: 131 VTHDDVKQRMSAEEPATGGKQTEIADAREKLAILVASGKSREMVVKAVTHDDVKQRMSAE 190 Query: 88 KTYCTRMQEENIHRAIV 104 +T T ++H +V Sbjct: 191 ETDATEDSVIDLHNYLV 207 >SB_4632| Best HMM Match : DUF548 (HMM E-Value=4.4) Length = 330 Score = 26.6 bits (56), Expect = 9.9 Identities = 14/45 (31%), Positives = 20/45 (44%) Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116 +FVF+P E + I+ Y T E H + + G S KQ Sbjct: 12 VFVFYPGEGYRNVHVIRGYDTAADEYXSHLNLFSDEGGTYNSGKQ 56 >SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3) Length = 126 Score = 26.6 bits (56), Expect = 9.9 Identities = 11/26 (42%), Positives = 18/26 (69%) Query: 46 DKPSEKRPARSDLIVLVAHNDDPTDQ 71 D+P+ K+P S L LVA++ D +D+ Sbjct: 70 DEPAAKKPKSSALSSLVAYDGDSSDE 95 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,528,736 Number of Sequences: 59808 Number of extensions: 218506 Number of successful extensions: 705 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 671 Number of HSP's gapped (non-prelim): 42 length of query: 162 length of database: 16,821,457 effective HSP length: 77 effective length of query: 85 effective length of database: 12,216,241 effective search space: 1038380485 effective search space used: 1038380485 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 56 (26.6 bits)
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