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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
         (162 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.46 
SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)                     29   1.4  
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)                     29   1.9  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          29   1.9  
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2)                     29   2.4  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)                    28   4.3  
SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_13013| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)                     28   4.3  
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_58631| Best HMM Match : DUF548 (HMM E-Value=3.7)                    27   5.6  
SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5)                     27   5.6  
SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)                 27   5.6  
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)                   27   5.6  
SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)                  27   5.6  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 27   7.5  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)             27   7.5  
SB_11712| Best HMM Match : Trypsin (HMM E-Value=4)                     27   7.5  
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)                  27   7.5  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   27   7.5  
SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_17222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)                      27   7.5  
SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)                 27   9.9  
SB_31034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_5055| Best HMM Match : DUF433 (HMM E-Value=0.4)                     27   9.9  
SB_4632| Best HMM Match : DUF548 (HMM E-Value=4.4)                     27   9.9  
SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3)                 27   9.9  

>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 78  DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLI 137
           DEA    K +K     M++  +H A   V    +PSA  +    + K+ L+   E E+L 
Sbjct: 257 DEAGAANKRVKEAPIWMKQSTVHSAPEAVAQAATPSAAST----SEKHALDHSTEDEVLA 312

Query: 138 NITEHELV 145
           ++  HE V
Sbjct: 313 DLLAHESV 320


>SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)
          Length = 499

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E + H  + + + G   S KQ
Sbjct: 218 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQ 262


>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E + H  + + + G   S KQ
Sbjct: 318 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQ 362


>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 1217

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFL 131
           +FVF+P E    +  I+ Y T   E   H  +   + G   + KQ+  D A    L++ +
Sbjct: 200 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNNGKQARADKAGLGRLDRSV 259

Query: 132 ES 133
           E+
Sbjct: 260 EA 261


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 101 RAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELL-INITEHELVPEHI 149
           +AIV   +  SP   Q LVD A  Y+L+  LESE   +    HELV  ++
Sbjct: 48  KAIVRRLSLPSPPKLQILVDRAAHYVLKNTLESEYAKVKSGIHELVTMYL 97


>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAK---QSLVDMAPKYILE 128
           +FVF+P E    +  I+ Y T   E   H  +   + G   S K    S+VD+  + + +
Sbjct: 805 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKLPIDSVVDLHNELVSD 864

Query: 129 QFLESEL 135
             + +EL
Sbjct: 865 YIINNEL 871


>SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVFFP E    +  I+ Y T + E   H  +   + G   S KQ
Sbjct: 69  VFVFFPGEGYRNVHVIRVYDTAVDEYPSHLNLFSDEGGKYNSGKQ 113


>SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 55  RSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSA 114
           R+ ++V+          +FVF+P E    +  I+ Y T   E   H  +   + G   S 
Sbjct: 17  RAGIVVIWCSRSHGLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSG 76

Query: 115 KQ 116
           KQ
Sbjct: 77  KQ 78


>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T M E   H  +   + G   S KQ
Sbjct: 244 VFVFYPGEGYRNVHVIRGYDTAMDEYPSHLNLFSDEGGTYKSGKQ 288


>SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2)
          Length = 344

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 125
           +FVF+P E    +  I+ Y T   E   H  +   + G   S KQ L  +   +
Sbjct: 227 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQQLTSITKPF 280


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 93   RMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 152
            R +E  +H+ +    A ++ + K+   D+A K       E E+   + +HE    ++  T
Sbjct: 3819 REEETAVHKLLKEQDAKLAEAMKELSEDLANKLAAGDLTEDEMRAIMDDHERQIANLATT 3878

Query: 153  PDEKQE 158
             D ++E
Sbjct: 3879 LDSEKE 3884


>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
          Length = 440

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74
          LC D   ++T +E  Q  E+F E+F      D P++K P R + + ++       D   +
Sbjct: 38 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 97



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 20  LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74
           LC D   ++T +E  Q  E+F E+F      D P++K P R + + ++       D   +
Sbjct: 294 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 353


>SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 98  NIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 135
           +I +AI+  Q G SPS  Q  + +    IL+Q+L+  L
Sbjct: 139 SIGKAIITFQVGSSPSFGQVRIGLKLLMILKQYLDGGL 176


>SB_13013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 65  NDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           N  P D +FVF+P E    +  I+ Y T   E   H  +   + G   S KQ
Sbjct: 70  NHGPGD-VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 120


>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 323

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 47  KPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE 96
           K + KR  R   I ++     P D +  F P E K+  K   TY T + E
Sbjct: 68  KANSKRYKRDVAIKIICKKKAPEDFLTKFLPREIKVLKKIKNTYVTTLLE 117


>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1370

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P+E    +  I+ Y T   E   H  +   + G   S KQ
Sbjct: 210 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 254


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 20   LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDD 67
            LC D   ++T  E  Q  E+F E+F      D P++K P R + + ++    D
Sbjct: 1069 LCGDLSEMITAREAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSD 1121


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P+E    +  I+ Y T   E   H  +   + G   S KQ
Sbjct: 669 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 713


>SB_58631| Best HMM Match : DUF548 (HMM E-Value=3.7)
          Length = 460

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E + H  +   + G   S KQ
Sbjct: 220 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 264


>SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5)
          Length = 181

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    ++ I+ Y T   E   H  +   + G   S KQ
Sbjct: 89  VFVFYPGEGYRNVRVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 133


>SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)
          Length = 1255

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 70  DQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           D +FVF+P E    +  I+ Y T   E   H  +   + G   + KQ
Sbjct: 319 DDVFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNNGKQ 365


>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
          Length = 908

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E + H  +   + G   S KQ
Sbjct: 700 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 744


>SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E + H  +   + G   S KQ
Sbjct: 121 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 165


>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
          Length = 1171

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 97  ENIHRAI-VVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIV 150
           E I  AI + ++  + P AK+   +MAP+Y  EQ++E +  +N  +++   E +V
Sbjct: 756 EMIKEAIDMYIEGELWPKAKRCAAEMAPRY--EQYVE-DAYVNFLKNQGQAEQLV 807


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T + E   H  +   + G   S KQ
Sbjct: 199 VFVFYPKEGYRNVHVIRGYNTAVDEYPSHLNLFSDEGGTYNSGKQ 243


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72   MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
            +FVF+P E    +  I+ Y T + E   H  +   + G   S KQ
Sbjct: 1540 VFVFYPGEGYRNVHVIRGYDTAVDEYPSHLNLFSDEGGTYNSGKQ 1584


>SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)
          Length = 726

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 35  QTLEQFKEQFGDKPSEKRPARS 56
           Q  +Q + Q G+KPS+KRP ++
Sbjct: 85  QAAKQLRVQEGEKPSDKRPLKT 106


>SB_11712| Best HMM Match : Trypsin (HMM E-Value=4)
          Length = 562

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 70  DQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           D +FVF+P E    +  I+ Y T   +   H  +   + G   S KQ
Sbjct: 251 DDVFVFYPGEGYRNVHVIRGYDTAADKYPSHLNLFSDEGGTYNSGKQ 297


>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
          Length = 659

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 38  EQFKEQFGDKPSEKRPARSDLIVLVAH 64
           EQ+K++   K + KRP RS L V++A+
Sbjct: 259 EQYKKERKSKKNVKRPPRSALQVMIAN 285


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 20  LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74
           LC D   ++T +E  Q  E F E+F      D P++K P R + + ++       D   +
Sbjct: 347 LCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 406


>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T + E   H  +   ++G   S KQ
Sbjct: 623 VFVFYPGEGYRNVHVIRGYDTAVDEYLSHLNLFSDESGTYNSGKQ 667


>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    ++ I+ Y T   E   H  +   + G   S KQ
Sbjct: 873 VFVFYPGEGYRNVQVIRGYNTAADEYPSHLNLFSDEGGTYNSGKQ 917


>SB_17222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T  +E   H  +   + G   S KQ
Sbjct: 278 VFVFYPGEGYRNVHVIRGYDTAAEEYPSHLNLFSDEGGTYNSGKQ 322


>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 115 KQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQEL 159
           +Q   + + +  +EQ  E  L + I E E + E+  LT ++KQ++
Sbjct: 580 RQKADEWSAQEAVEQLAEQSLTVTIEEVEEIYENCPLTDEDKQKV 624


>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 566

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E   H  +   + G   S KQ
Sbjct: 455 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFTDEGGTYNSGKQ 499


>SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
          Length = 480

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I++Y T   E   H  +   + G   S K+
Sbjct: 202 VFVFYPGEGYSNVHVIRSYDTAADEYPSHLNLFSDEGGTYNSGKE 246


>SB_31034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T + E   H  +   + G   S KQ
Sbjct: 92  VFVFYPGEGYRNVHVIRGYDTAVDEYPSHFNLFSDEGGTYNSGKQ 136


>SB_5055| Best HMM Match : DUF433 (HMM E-Value=0.4)
          Length = 280

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 28  VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 87
           VT D++ Q +   +   G K +E   AR  L +LVA        +     D+ K  +   
Sbjct: 131 VTHDDVKQRMSAEEPATGGKQTEIADAREKLAILVASGKSREMVVKAVTHDDVKQRMSAE 190

Query: 88  KTYCTRMQEENIHRAIV 104
           +T  T     ++H  +V
Sbjct: 191 ETDATEDSVIDLHNYLV 207


>SB_4632| Best HMM Match : DUF548 (HMM E-Value=4.4)
          Length = 330

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 72  MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
           +FVF+P E    +  I+ Y T   E   H  +   + G   S KQ
Sbjct: 12  VFVFYPGEGYRNVHVIRGYDTAADEYXSHLNLFSDEGGTYNSGKQ 56


>SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3)
          Length = 126

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 46 DKPSEKRPARSDLIVLVAHNDDPTDQ 71
          D+P+ K+P  S L  LVA++ D +D+
Sbjct: 70 DEPAAKKPKSSALSSLVAYDGDSSDE 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,528,736
Number of Sequences: 59808
Number of extensions: 218506
Number of successful extensions: 705
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 42
length of query: 162
length of database: 16,821,457
effective HSP length: 77
effective length of query: 85
effective length of database: 12,216,241
effective search space: 1038380485
effective search space used: 1038380485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)

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