Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
(162 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9) 29 1.4
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9) 29 1.9
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 29 1.9
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2) 29 2.4
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1) 28 4.3
SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_13013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0) 28 4.3
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_58631| Best HMM Match : DUF548 (HMM E-Value=3.7) 27 5.6
SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5) 27 5.6
SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8) 27 5.6
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) 27 5.6
SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065) 27 5.6
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 27 7.5
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22) 27 7.5
SB_11712| Best HMM Match : Trypsin (HMM E-Value=4) 27 7.5
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18) 27 7.5
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 27 7.5
SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_17222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9) 27 7.5
SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5) 27 9.9
SB_31034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_5055| Best HMM Match : DUF433 (HMM E-Value=0.4) 27 9.9
SB_4632| Best HMM Match : DUF548 (HMM E-Value=4.4) 27 9.9
SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3) 27 9.9
>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 78 DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLI 137
DEA K +K M++ +H A V +PSA + + K+ L+ E E+L
Sbjct: 257 DEAGAANKRVKEAPIWMKQSTVHSAPEAVAQAATPSAAST----SEKHALDHSTEDEVLA 312
Query: 138 NITEHELV 145
++ HE V
Sbjct: 313 DLLAHESV 320
>SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)
Length = 499
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E + H + + + G S KQ
Sbjct: 218 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQ 262
>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E + H + + + G S KQ
Sbjct: 318 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFIDEGGTYNSGKQ 362
>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 1217
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFL 131
+FVF+P E + I+ Y T E H + + G + KQ+ D A L++ +
Sbjct: 200 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNNGKQARADKAGLGRLDRSV 259
Query: 132 ES 133
E+
Sbjct: 260 EA 261
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 101 RAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELL-INITEHELVPEHI 149
+AIV + SP Q LVD A Y+L+ LESE + HELV ++
Sbjct: 48 KAIVRRLSLPSPPKLQILVDRAAHYVLKNTLESEYAKVKSGIHELVTMYL 97
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAK---QSLVDMAPKYILE 128
+FVF+P E + I+ Y T E H + + G S K S+VD+ + + +
Sbjct: 805 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKLPIDSVVDLHNELVSD 864
Query: 129 QFLESEL 135
+ +EL
Sbjct: 865 YIINNEL 871
>SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVFFP E + I+ Y T + E H + + G S KQ
Sbjct: 69 VFVFFPGEGYRNVHVIRVYDTAVDEYPSHLNLFSDEGGKYNSGKQ 113
>SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 55 RSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSA 114
R+ ++V+ +FVF+P E + I+ Y T E H + + G S
Sbjct: 17 RAGIVVIWCSRSHGLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSG 76
Query: 115 KQ 116
KQ
Sbjct: 77 KQ 78
>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T M E H + + G S KQ
Sbjct: 244 VFVFYPGEGYRNVHVIRGYDTAMDEYPSHLNLFSDEGGTYKSGKQ 288
>SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2)
Length = 344
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 125
+FVF+P E + I+ Y T E H + + G S KQ L + +
Sbjct: 227 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQQLTSITKPF 280
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 93 RMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 152
R +E +H+ + A ++ + K+ D+A K E E+ + +HE ++ T
Sbjct: 3819 REEETAVHKLLKEQDAKLAEAMKELSEDLANKLAAGDLTEDEMRAIMDDHERQIANLATT 3878
Query: 153 PDEKQE 158
D ++E
Sbjct: 3879 LDSEKE 3884
>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
Length = 440
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74
LC D ++T +E Q E+F E+F D P++K P R + + ++ D +
Sbjct: 38 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 97
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74
LC D ++T +E Q E+F E+F D P++K P R + + ++ D +
Sbjct: 294 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 353
>SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 98 NIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 135
+I +AI+ Q G SPS Q + + IL+Q+L+ L
Sbjct: 139 SIGKAIITFQVGSSPSFGQVRIGLKLLMILKQYLDGGL 176
>SB_13013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 65 NDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
N P D +FVF+P E + I+ Y T E H + + G S KQ
Sbjct: 70 NHGPGD-VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 120
>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 323
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 47 KPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE 96
K + KR R I ++ P D + F P E K+ K TY T + E
Sbjct: 68 KANSKRYKRDVAIKIICKKKAPEDFLTKFLPREIKVLKKIKNTYVTTLLE 117
>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1370
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P+E + I+ Y T E H + + G S KQ
Sbjct: 210 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 254
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDD 67
LC D ++T E Q E+F E+F D P++K P R + + ++ D
Sbjct: 1069 LCGDLSEMITAREAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSD 1121
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P+E + I+ Y T E H + + G S KQ
Sbjct: 669 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 713
>SB_58631| Best HMM Match : DUF548 (HMM E-Value=3.7)
Length = 460
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E + H + + G S KQ
Sbjct: 220 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 264
>SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5)
Length = 181
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E ++ I+ Y T E H + + G S KQ
Sbjct: 89 VFVFYPGEGYRNVRVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 133
>SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)
Length = 1255
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 70 DQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
D +FVF+P E + I+ Y T E H + + G + KQ
Sbjct: 319 DDVFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNNGKQ 365
>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
Length = 908
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E + H + + G S KQ
Sbjct: 700 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 744
>SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E + H + + G S KQ
Sbjct: 121 VFVFYPGEGYRNVHVIRGYDTAADEYSSHLNLFSDEGGTYNSGKQ 165
>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
Length = 1171
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 97 ENIHRAI-VVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIV 150
E I AI + ++ + P AK+ +MAP+Y EQ++E + +N +++ E +V
Sbjct: 756 EMIKEAIDMYIEGELWPKAKRCAAEMAPRY--EQYVE-DAYVNFLKNQGQAEQLV 807
>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
Length = 1736
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T + E H + + G S KQ
Sbjct: 199 VFVFYPKEGYRNVHVIRGYNTAVDEYPSHLNLFSDEGGTYNSGKQ 243
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T + E H + + G S KQ
Sbjct: 1540 VFVFYPGEGYRNVHVIRGYDTAVDEYPSHLNLFSDEGGTYNSGKQ 1584
>SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)
Length = 726
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 35 QTLEQFKEQFGDKPSEKRPARS 56
Q +Q + Q G+KPS+KRP ++
Sbjct: 85 QAAKQLRVQEGEKPSDKRPLKT 106
>SB_11712| Best HMM Match : Trypsin (HMM E-Value=4)
Length = 562
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 70 DQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
D +FVF+P E + I+ Y T + H + + G S KQ
Sbjct: 251 DDVFVFYPGEGYRNVHVIRGYDTAADKYPSHLNLFSDEGGTYNSGKQ 297
>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
Length = 659
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 38 EQFKEQFGDKPSEKRPARSDLIVLVAH 64
EQ+K++ K + KRP RS L V++A+
Sbjct: 259 EQYKKERKSKKNVKRPPRSALQVMIAN 285
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 20 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 74
LC D ++T +E Q E F E+F D P++K P R + + ++ D +
Sbjct: 347 LCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 406
>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T + E H + ++G S KQ
Sbjct: 623 VFVFYPGEGYRNVHVIRGYDTAVDEYLSHLNLFSDESGTYNSGKQ 667
>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E ++ I+ Y T E H + + G S KQ
Sbjct: 873 VFVFYPGEGYRNVQVIRGYNTAADEYPSHLNLFSDEGGTYNSGKQ 917
>SB_17222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T +E H + + G S KQ
Sbjct: 278 VFVFYPGEGYRNVHVIRGYDTAAEEYPSHLNLFSDEGGTYNSGKQ 322
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 115 KQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQEL 159
+Q + + + +EQ E L + I E E + E+ LT ++KQ++
Sbjct: 580 RQKADEWSAQEAVEQLAEQSLTVTIEEVEEIYENCPLTDEDKQKV 624
>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 566
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E H + + G S KQ
Sbjct: 455 VFVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFTDEGGTYNSGKQ 499
>SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
Length = 480
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I++Y T E H + + G S K+
Sbjct: 202 VFVFYPGEGYSNVHVIRSYDTAADEYPSHLNLFSDEGGTYNSGKE 246
>SB_31034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T + E H + + G S KQ
Sbjct: 92 VFVFYPGEGYRNVHVIRGYDTAVDEYPSHFNLFSDEGGTYNSGKQ 136
>SB_5055| Best HMM Match : DUF433 (HMM E-Value=0.4)
Length = 280
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 87
VT D++ Q + + G K +E AR L +LVA + D+ K +
Sbjct: 131 VTHDDVKQRMSAEEPATGGKQTEIADAREKLAILVASGKSREMVVKAVTHDDVKQRMSAE 190
Query: 88 KTYCTRMQEENIHRAIV 104
+T T ++H +V
Sbjct: 191 ETDATEDSVIDLHNYLV 207
>SB_4632| Best HMM Match : DUF548 (HMM E-Value=4.4)
Length = 330
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 72 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 116
+FVF+P E + I+ Y T E H + + G S KQ
Sbjct: 12 VFVFYPGEGYRNVHVIRGYDTAADEYXSHLNLFSDEGGTYNSGKQ 56
>SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3)
Length = 126
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 46 DKPSEKRPARSDLIVLVAHNDDPTDQ 71
D+P+ K+P S L LVA++ D +D+
Sbjct: 70 DEPAAKKPKSSALSSLVAYDGDSSDE 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,528,736
Number of Sequences: 59808
Number of extensions: 218506
Number of successful extensions: 705
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 42
length of query: 162
length of database: 16,821,457
effective HSP length: 77
effective length of query: 85
effective length of database: 12,216,241
effective search space: 1038380485
effective search space used: 1038380485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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