GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
         (162 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   3.6  
DQ004402-1|AAY21241.1|  144|Anopheles gambiae lysozyme c-8 protein.    22   8.2  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 127  LEQFLESELLINITEHELVPEHIVLTPD 154
            L QFL  E+ +N TEH       +  PD
Sbjct: 1385 LPQFLLKEISLNFTEHMTPGTERIRLPD 1412


>DQ004402-1|AAY21241.1|  144|Anopheles gambiae lysozyme c-8 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 79  EAKIGIKTIKTYCTRMQEENI 99
           E K+G    K  C+ ++++NI
Sbjct: 82  EGKVGANECKLQCSSLRDDNI 102


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,020
Number of Sequences: 2123
Number of extensions: 6170
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 516,269
effective HSP length: 59
effective length of query: 103
effective length of database: 391,012
effective search space: 40274236
effective search space used: 40274236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)