Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
(162 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein. 293 2e-79
J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD su... 291 6e-79
BC034144-1|AAH34144.1| 210|Homo sapiens polymerase (RNA) II (DN... 291 6e-79
BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DN... 291 6e-79
AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein. 288 5e-78
Z82203-1|CAI42695.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.27
AL672138-1|CAI41508.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.27
AL158201-3|CAI40982.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.27
AL157700-1|CAD18899.2| 802|Homo sapiens oligophrenin 1 protein. 34 0.27
AJ248245-1|CAB96181.1| 802|Homo sapiens oligophrenin-1 protein. 34 0.27
AJ001189-1|CAA04579.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.27
AB102656-1|BAC81125.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.27
AB007880-1|BAA24850.2| 756|Homo sapiens KIAA0420 protein. 34 0.27
U79284-1|AAB50220.1| 297|Homo sapiens SEC14L protein. 31 2.5
D67029-1|BAA11048.1| 715|Homo sapiens SEC14L protein. 31 2.5
BC106878-1|AAI06879.1| 755|Homo sapiens STRN protein protein. 31 2.5
AJ223814-1|CAA11560.1| 780|Homo sapiens striatin protein. 31 2.5
AC007382-1|AAF66162.1| 616|Homo sapiens unknown protein. 31 2.5
AB208811-1|BAD92048.1| 723|Homo sapiens Hypothetical protein DK... 31 2.5
X07695-1|CAA30534.1| 408|Homo sapiens cytokeratin 4 (408 AA) pr... 29 5.7
BX538025-1|CAD97971.1| 2416|Homo sapiens hypothetical protein pr... 29 5.7
BC042174-1|AAH42174.1| 534|Homo sapiens KRT4 protein protein. 29 5.7
AY043326-1|AAL14196.1| 534|Homo sapiens keratin 4 protein. 29 5.7
AB002319-1|BAA20779.1| 1542|Homo sapiens KIAA0321 protein. 29 5.7
>D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein.
Length = 210
Score = 293 bits (719), Expect = 2e-79
Identities = 134/162 (82%), Positives = 148/162 (91%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFLE ELLINITEHELVPEH+V+T +E ELLAR
Sbjct: 121 MAPKYILEQFLEQELLINITEHELVPEHVVMTKEEVSELLAR 162
>J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD
subunit protein.
Length = 210
Score = 291 bits (715), Expect = 6e-79
Identities = 133/162 (82%), Positives = 148/162 (91%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLAR
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>BC034144-1|AAH34144.1| 210|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide E, 25kDa protein.
Length = 210
Score = 291 bits (715), Expect = 6e-79
Identities = 133/162 (82%), Positives = 148/162 (91%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLAR
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide E, 25kDa protein.
Length = 210
Score = 291 bits (715), Expect = 6e-79
Identities = 133/162 (82%), Positives = 148/162 (91%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLAR
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein.
Length = 210
Score = 288 bits (707), Expect = 5e-78
Identities = 132/162 (81%), Positives = 147/162 (90%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLAR
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>Z82203-1|CAI42695.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AL672138-1|CAI41508.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AL158201-3|CAI40982.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AL157700-1|CAD18899.2| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AJ248245-1|CAB96181.1| 802|Homo sapiens oligophrenin-1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AJ001189-1|CAA04579.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AB102656-1|BAC81125.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 68 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 127
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 128 EQFLES 133
+ ES
Sbjct: 323 RRKTES 328
>AB007880-1|BAA24850.2| 756|Homo sapiens KIAA0420 protein.
Length = 756
Score = 33.9 bits (74), Expect = 0.27
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 97 ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEK 156
EN R ++ +G + LVD + ++ FL E + N+ E LVP+ + +T +E+
Sbjct: 501 ENTRRKFLIY-SGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQ 559
Query: 157 Q 157
+
Sbjct: 560 E 560
>U79284-1|AAB50220.1| 297|Homo sapiens SEC14L protein.
Length = 297
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDE 155
++N R ++ AG L+D K I+ FL E + + E LVP+ + T +E
Sbjct: 31 DDNTRRKFLIY-AGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEE 89
>D67029-1|BAA11048.1| 715|Homo sapiens SEC14L protein.
Length = 715
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDE 155
++N R ++ AG L+D K I+ FL E + + E LVP+ + T +E
Sbjct: 453 DDNTRRKFLIY-AGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEE 511
>BC106878-1|AAI06879.1| 755|Homo sapiens STRN protein protein.
Length = 755
Score = 30.7 bits (66), Expect = 2.5
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 87
V Q + + EQ+K++ K KRP RS L ++A+ D D++ P +G +
Sbjct: 299 VDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRD-VDELPSLQP---SVGSPS- 353
Query: 88 KTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 135
+ +R+ E I+RA V PS+ +S + A ++ LESEL
Sbjct: 354 RPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGA-----DEALESEL 396
>AJ223814-1|CAA11560.1| 780|Homo sapiens striatin protein.
Length = 780
Score = 30.7 bits (66), Expect = 2.5
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 87
V Q + + EQ+K++ K KRP RS L ++A+ D D++ P +G +
Sbjct: 324 VDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRD-VDELPSLQP---SVGSPS- 378
Query: 88 KTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 135
+ +R+ E I+RA V PS+ +S + A ++ LESEL
Sbjct: 379 RPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGA-----DEALESEL 421
>AC007382-1|AAF66162.1| 616|Homo sapiens unknown protein.
Length = 616
Score = 30.7 bits (66), Expect = 2.5
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 87
V Q + + EQ+K++ K KRP RS L ++A+ D D++ P +G +
Sbjct: 160 VDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRD-VDELPSLQP---SVGSPS- 214
Query: 88 KTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 135
+ +R+ E I+RA V PS+ +S + A ++ LESEL
Sbjct: 215 RPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGA-----DEALESEL 257
>AB208811-1|BAD92048.1| 723|Homo sapiens Hypothetical protein
DKFZp686C06176 variant protein.
Length = 723
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDE 155
++N R ++ AG L+D K I+ FL E + + E LVP+ + T +E
Sbjct: 461 DDNTRRKFLIY-AGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEE 519
>X07695-1|CAA30534.1| 408|Homo sapiens cytokeratin 4 (408 AA)
protein.
Length = 408
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQ-DELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
ETY L +RK + L +D+G L ++ + ++E FK ++ ++ +++ A +D +VL
Sbjct: 77 ETY-LSVLRKQLDTLGNDKGRLQSELKTMQDSVEDFKTKYEEEINKRTAAENDFVVL 132
>BX538025-1|CAD97971.1| 2416|Homo sapiens hypothetical protein
protein.
Length = 2416
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 15 KTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
+T+ QL + T DE+D L ++ E+ D P +R RSD ++
Sbjct: 1576 QTLQQLLVGQEIGFTMDEVDSLLSRYAEKALDFPYPQREKRSDSVI 1621
>BC042174-1|AAH42174.1| 534|Homo sapiens KRT4 protein protein.
Length = 534
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQ-DELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
ETY L +RK + L +D+G L ++ + ++E FK ++ ++ +++ A +D +VL
Sbjct: 203 ETY-LSVLRKQLDTLGNDKGRLQSELKTMQDSVEDFKTKYEEEINKRTAAENDFVVL 258
>AY043326-1|AAL14196.1| 534|Homo sapiens keratin 4 protein.
Length = 534
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 6 ETYKLWRIRKTVMQLCHDRGYLVTQ-DELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
ETY L +RK + L +D+G L ++ + ++E FK ++ ++ +++ A +D +VL
Sbjct: 203 ETY-LSVLRKQLDTLGNDKGRLQSELKTMQDSVEDFKTKYEEEINKRTAAENDFVVL 258
>AB002319-1|BAA20779.1| 1542|Homo sapiens KIAA0321 protein.
Length = 1542
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 15 KTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
+T+ QL + T DE+D L ++ E+ D P +R RSD ++
Sbjct: 702 QTLQQLLVGQEIGFTMDEVDSLLSRYAEKALDFPYPQREKRSDSVI 747
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,671,926
Number of Sequences: 224733
Number of extensions: 845684
Number of successful extensions: 1959
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 24
length of query: 162
length of database: 73,234,838
effective HSP length: 84
effective length of query: 78
effective length of database: 54,357,266
effective search space: 4239866748
effective search space used: 4239866748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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