Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
(162 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071329-1|AAL48951.1| 210|Drosophila melanogaster RE34924p pro... 318 2e-87
AE013599-1201|AAF58728.1| 210|Drosophila melanogaster CG11979-P... 318 2e-87
BT001526-1|AAN71281.1| 720|Drosophila melanogaster RE04406p pro... 29 3.1
AF124743-1|AAD32857.1| 720|Drosophila melanogaster DNA replicat... 29 3.1
AE014296-1533|AAF50357.1| 720|Drosophila melanogaster CG4978-PA... 29 3.1
AB010109-1|BAA34733.1| 717|Drosophila melanogaster MCM7 protein. 29 3.1
BT016084-1|AAV36969.1| 359|Drosophila melanogaster LD45683p pro... 29 4.0
AY122167-1|AAM52679.1| 361|Drosophila melanogaster LD24586p pro... 29 4.0
AY051458-1|AAK92882.1| 459|Drosophila melanogaster GH13040p pro... 28 5.3
AE013599-1044|AAM68775.1| 459|Drosophila melanogaster CG12214-P... 28 5.3
AE013599-1043|AAF58828.1| 459|Drosophila melanogaster CG12214-P... 28 5.3
>AY071329-1|AAL48951.1| 210|Drosophila melanogaster RE34924p
protein.
Length = 210
Score = 318 bits (782), Expect = 2e-87
Identities = 149/162 (91%), Positives = 157/162 (96%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+AETYKLWRIRKT+MQL HDRGYLVTQDELDQTLEQFKE FGDKPSEKRPARSDLIV
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E KIGIKTIKTYCTRMQEENIHRAIVVVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFLESELLINITEHELVPEH+V+T +EKQELL+R
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162
>AE013599-1201|AAF58728.1| 210|Drosophila melanogaster CG11979-PA
protein.
Length = 210
Score = 318 bits (782), Expect = 2e-87
Identities = 149/162 (91%), Positives = 157/162 (96%)
Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
MDD+AETYKLWRIRKT+MQL HDRGYLVTQDELDQTLEQFKE FGDKPSEKRPARSDLIV
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
LVAHNDDPTDQMFVFFP+E KIGIKTIKTYCTRMQEENIHRAIVVVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
MAPKYILEQFLESELLINITEHELVPEH+V+T +EKQELL+R
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162
>BT001526-1|AAN71281.1| 720|Drosophila melanogaster RE04406p
protein.
Length = 720
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
TRM + H +VV P + M + E FL++ +I I ++ E+ +
Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318
Query: 151 LTPDEKQEL 159
LTP+E +EL
Sbjct: 319 LTPEELEEL 327
>AF124743-1|AAD32857.1| 720|Drosophila melanogaster DNA replication
factor MCM7 protein.
Length = 720
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
TRM + H +VV P + M + E FL++ +I I ++ E+ +
Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318
Query: 151 LTPDEKQEL 159
LTP+E +EL
Sbjct: 319 LTPEELEEL 327
>AE014296-1533|AAF50357.1| 720|Drosophila melanogaster CG4978-PA
protein.
Length = 720
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
TRM + H +VV P + M + E FL++ +I I ++ E+ +
Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318
Query: 151 LTPDEKQEL 159
LTP+E +EL
Sbjct: 319 LTPEELEEL 327
>AB010109-1|BAA34733.1| 717|Drosophila melanogaster MCM7 protein.
Length = 717
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
TRM + H +VV P + M + E FL++ +I I ++ E+ +
Sbjct: 260 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 316
Query: 151 LTPDEKQEL 159
LTP+E +EL
Sbjct: 317 LTPEELEEL 325
>BT016084-1|AAV36969.1| 359|Drosophila melanogaster LD45683p
protein.
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTR 93
D+T++++ +G K +E A+ D ++ V N DP MF + KI ++ K
Sbjct: 140 DETMDKWVPTYGFKRAEAEKAK-DWVLEVPQNADPNTDMF-----QKKIDLRNEKVAKNE 193
Query: 94 MQE-ENIHRA 102
+Q +NI RA
Sbjct: 194 IQRMKNIVRA 203
>AY122167-1|AAM52679.1| 361|Drosophila melanogaster LD24586p
protein.
Length = 361
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTR 93
D+T++++ +G K +E A+ D ++ V N DP MF + KI ++ K
Sbjct: 142 DETMDKWVPTYGFKRAEAEKAK-DWVLEVPQNADPNTDMF-----QKKIDLRNEKVAKNE 195
Query: 94 MQE-ENIHRA 102
+Q +NI RA
Sbjct: 196 IQRMKNIVRA 205
>AY051458-1|AAK92882.1| 459|Drosophila melanogaster GH13040p
protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 25 GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
G ++ DE + F + DKP E+RPAR ++ + DP
Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367
>AE013599-1044|AAM68775.1| 459|Drosophila melanogaster CG12214-PB,
isoform B protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 25 GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
G ++ DE + F + DKP E+RPAR ++ + DP
Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367
>AE013599-1043|AAF58828.1| 459|Drosophila melanogaster CG12214-PA,
isoform A protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 25 GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
G ++ DE + F + DKP E+RPAR ++ + DP
Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,004,970
Number of Sequences: 52641
Number of extensions: 320286
Number of successful extensions: 889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 11
length of query: 162
length of database: 24,830,863
effective HSP length: 79
effective length of query: 83
effective length of database: 20,672,224
effective search space: 1715794592
effective search space used: 1715794592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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