BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like, IPR005571|RNA polymerase Rpb5, N-terminal (162 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY071329-1|AAL48951.1| 210|Drosophila melanogaster RE34924p pro... 318 2e-87 AE013599-1201|AAF58728.1| 210|Drosophila melanogaster CG11979-P... 318 2e-87 BT001526-1|AAN71281.1| 720|Drosophila melanogaster RE04406p pro... 29 3.1 AF124743-1|AAD32857.1| 720|Drosophila melanogaster DNA replicat... 29 3.1 AE014296-1533|AAF50357.1| 720|Drosophila melanogaster CG4978-PA... 29 3.1 AB010109-1|BAA34733.1| 717|Drosophila melanogaster MCM7 protein. 29 3.1 BT016084-1|AAV36969.1| 359|Drosophila melanogaster LD45683p pro... 29 4.0 AY122167-1|AAM52679.1| 361|Drosophila melanogaster LD24586p pro... 29 4.0 AY051458-1|AAK92882.1| 459|Drosophila melanogaster GH13040p pro... 28 5.3 AE013599-1044|AAM68775.1| 459|Drosophila melanogaster CG12214-P... 28 5.3 AE013599-1043|AAF58828.1| 459|Drosophila melanogaster CG12214-P... 28 5.3 >AY071329-1|AAL48951.1| 210|Drosophila melanogaster RE34924p protein. Length = 210 Score = 318 bits (782), Expect = 2e-87 Identities = 149/162 (91%), Positives = 157/162 (96%) Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60 MDD+AETYKLWRIRKT+MQL HDRGYLVTQDELDQTLEQFKE FGDKPSEKRPARSDLIV Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60 Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120 LVAHNDDPTDQMFVFFP+E KIGIKTIKTYCTRMQEENIHRAIVVVQ GM+PSAKQSLVD Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120 Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162 MAPKYILEQFLESELLINITEHELVPEH+V+T +EKQELL+R Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162 >AE013599-1201|AAF58728.1| 210|Drosophila melanogaster CG11979-PA protein. Length = 210 Score = 318 bits (782), Expect = 2e-87 Identities = 149/162 (91%), Positives = 157/162 (96%) Query: 1 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60 MDD+AETYKLWRIRKT+MQL HDRGYLVTQDELDQTLEQFKE FGDKPSEKRPARSDLIV Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60 Query: 61 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120 LVAHNDDPTDQMFVFFP+E KIGIKTIKTYCTRMQEENIHRAIVVVQ GM+PSAKQSLVD Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120 Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162 MAPKYILEQFLESELLINITEHELVPEH+V+T +EKQELL+R Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162 >BT001526-1|AAN71281.1| 720|Drosophila melanogaster RE04406p protein. Length = 720 Score = 29.1 bits (62), Expect = 3.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150 TRM + H +VV P + M + E FL++ +I I ++ E+ + Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318 Query: 151 LTPDEKQEL 159 LTP+E +EL Sbjct: 319 LTPEELEEL 327 >AF124743-1|AAD32857.1| 720|Drosophila melanogaster DNA replication factor MCM7 protein. Length = 720 Score = 29.1 bits (62), Expect = 3.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150 TRM + H +VV P + M + E FL++ +I I ++ E+ + Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318 Query: 151 LTPDEKQEL 159 LTP+E +EL Sbjct: 319 LTPEELEEL 327 >AE014296-1533|AAF50357.1| 720|Drosophila melanogaster CG4978-PA protein. Length = 720 Score = 29.1 bits (62), Expect = 3.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150 TRM + H +VV P + M + E FL++ +I I ++ E+ + Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318 Query: 151 LTPDEKQEL 159 LTP+E +EL Sbjct: 319 LTPEELEEL 327 >AB010109-1|BAA34733.1| 717|Drosophila melanogaster MCM7 protein. Length = 717 Score = 29.1 bits (62), Expect = 3.1 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 92 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150 TRM + H +VV P + M + E FL++ +I I ++ E+ + Sbjct: 260 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 316 Query: 151 LTPDEKQEL 159 LTP+E +EL Sbjct: 317 LTPEELEEL 325 >BT016084-1|AAV36969.1| 359|Drosophila melanogaster LD45683p protein. Length = 359 Score = 28.7 bits (61), Expect = 4.0 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTR 93 D+T++++ +G K +E A+ D ++ V N DP MF + KI ++ K Sbjct: 140 DETMDKWVPTYGFKRAEAEKAK-DWVLEVPQNADPNTDMF-----QKKIDLRNEKVAKNE 193 Query: 94 MQE-ENIHRA 102 +Q +NI RA Sbjct: 194 IQRMKNIVRA 203 >AY122167-1|AAM52679.1| 361|Drosophila melanogaster LD24586p protein. Length = 361 Score = 28.7 bits (61), Expect = 4.0 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTR 93 D+T++++ +G K +E A+ D ++ V N DP MF + KI ++ K Sbjct: 142 DETMDKWVPTYGFKRAEAEKAK-DWVLEVPQNADPNTDMF-----QKKIDLRNEKVAKNE 195 Query: 94 MQE-ENIHRA 102 +Q +NI RA Sbjct: 196 IQRMKNIVRA 205 >AY051458-1|AAK92882.1| 459|Drosophila melanogaster GH13040p protein. Length = 459 Score = 28.3 bits (60), Expect = 5.3 Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 25 GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68 G ++ DE + F + DKP E+RPAR ++ + DP Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367 >AE013599-1044|AAM68775.1| 459|Drosophila melanogaster CG12214-PB, isoform B protein. Length = 459 Score = 28.3 bits (60), Expect = 5.3 Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 25 GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68 G ++ DE + F + DKP E+RPAR ++ + DP Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367 >AE013599-1043|AAF58828.1| 459|Drosophila melanogaster CG12214-PA, isoform A protein. Length = 459 Score = 28.3 bits (60), Expect = 5.3 Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 25 GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68 G ++ DE + F + DKP E+RPAR ++ + DP Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,004,970 Number of Sequences: 52641 Number of extensions: 320286 Number of successful extensions: 889 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 884 Number of HSP's gapped (non-prelim): 11 length of query: 162 length of database: 24,830,863 effective HSP length: 79 effective length of query: 83 effective length of database: 20,672,224 effective search space: 1715794592 effective search space used: 1715794592 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 58 (27.5 bits)
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