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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
         (162 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071329-1|AAL48951.1|  210|Drosophila melanogaster RE34924p pro...   318   2e-87
AE013599-1201|AAF58728.1|  210|Drosophila melanogaster CG11979-P...   318   2e-87
BT001526-1|AAN71281.1|  720|Drosophila melanogaster RE04406p pro...    29   3.1  
AF124743-1|AAD32857.1|  720|Drosophila melanogaster DNA replicat...    29   3.1  
AE014296-1533|AAF50357.1|  720|Drosophila melanogaster CG4978-PA...    29   3.1  
AB010109-1|BAA34733.1|  717|Drosophila melanogaster MCM7 protein.      29   3.1  
BT016084-1|AAV36969.1|  359|Drosophila melanogaster LD45683p pro...    29   4.0  
AY122167-1|AAM52679.1|  361|Drosophila melanogaster LD24586p pro...    29   4.0  
AY051458-1|AAK92882.1|  459|Drosophila melanogaster GH13040p pro...    28   5.3  
AE013599-1044|AAM68775.1|  459|Drosophila melanogaster CG12214-P...    28   5.3  
AE013599-1043|AAF58828.1|  459|Drosophila melanogaster CG12214-P...    28   5.3  

>AY071329-1|AAL48951.1|  210|Drosophila melanogaster RE34924p
           protein.
          Length = 210

 Score =  318 bits (782), Expect = 2e-87
 Identities = 149/162 (91%), Positives = 157/162 (96%)

Query: 1   MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
           MDD+AETYKLWRIRKT+MQL HDRGYLVTQDELDQTLEQFKE FGDKPSEKRPARSDLIV
Sbjct: 1   MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60

Query: 61  LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
           LVAHNDDPTDQMFVFFP+E KIGIKTIKTYCTRMQEENIHRAIVVVQ GM+PSAKQSLVD
Sbjct: 61  LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120

Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
           MAPKYILEQFLESELLINITEHELVPEH+V+T +EKQELL+R
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162


>AE013599-1201|AAF58728.1|  210|Drosophila melanogaster CG11979-PA
           protein.
          Length = 210

 Score =  318 bits (782), Expect = 2e-87
 Identities = 149/162 (91%), Positives = 157/162 (96%)

Query: 1   MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
           MDD+AETYKLWRIRKT+MQL HDRGYLVTQDELDQTLEQFKE FGDKPSEKRPARSDLIV
Sbjct: 1   MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60

Query: 61  LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 120
           LVAHNDDPTDQMFVFFP+E KIGIKTIKTYCTRMQEENIHRAIVVVQ GM+PSAKQSLVD
Sbjct: 61  LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120

Query: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
           MAPKYILEQFLESELLINITEHELVPEH+V+T +EKQELL+R
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162


>BT001526-1|AAN71281.1|  720|Drosophila melanogaster RE04406p
           protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 92  TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
           TRM +   H   +VV     P  +     M    + E FL++  +I I ++ E+  +   
Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318

Query: 151 LTPDEKQEL 159
           LTP+E +EL
Sbjct: 319 LTPEELEEL 327


>AF124743-1|AAD32857.1|  720|Drosophila melanogaster DNA replication
           factor MCM7 protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 92  TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
           TRM +   H   +VV     P  +     M    + E FL++  +I I ++ E+  +   
Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318

Query: 151 LTPDEKQEL 159
           LTP+E +EL
Sbjct: 319 LTPEELEEL 327


>AE014296-1533|AAF50357.1|  720|Drosophila melanogaster CG4978-PA
           protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 92  TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
           TRM +   H   +VV     P  +     M    + E FL++  +I I ++ E+  +   
Sbjct: 262 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 318

Query: 151 LTPDEKQEL 159
           LTP+E +EL
Sbjct: 319 LTPEELEEL 327


>AB010109-1|BAA34733.1|  717|Drosophila melanogaster MCM7 protein.
          Length = 717

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 92  TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH-ELVPEHIV 150
           TRM +   H   +VV     P  +     M    + E FL++  +I I ++ E+  +   
Sbjct: 260 TRMAQPGDH---IVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKNDEISDKDAE 316

Query: 151 LTPDEKQEL 159
           LTP+E +EL
Sbjct: 317 LTPEELEEL 325


>BT016084-1|AAV36969.1|  359|Drosophila melanogaster LD45683p
           protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 34  DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTR 93
           D+T++++   +G K +E   A+ D ++ V  N DP   MF     + KI ++  K     
Sbjct: 140 DETMDKWVPTYGFKRAEAEKAK-DWVLEVPQNADPNTDMF-----QKKIDLRNEKVAKNE 193

Query: 94  MQE-ENIHRA 102
           +Q  +NI RA
Sbjct: 194 IQRMKNIVRA 203


>AY122167-1|AAM52679.1|  361|Drosophila melanogaster LD24586p
           protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 34  DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTR 93
           D+T++++   +G K +E   A+ D ++ V  N DP   MF     + KI ++  K     
Sbjct: 142 DETMDKWVPTYGFKRAEAEKAK-DWVLEVPQNADPNTDMF-----QKKIDLRNEKVAKNE 195

Query: 94  MQE-ENIHRA 102
           +Q  +NI RA
Sbjct: 196 IQRMKNIVRA 205


>AY051458-1|AAK92882.1|  459|Drosophila melanogaster GH13040p
           protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 25  GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
           G  ++ DE   +   F   + DKP E+RPAR   ++ +    DP
Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367


>AE013599-1044|AAM68775.1|  459|Drosophila melanogaster CG12214-PB,
           isoform B protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 25  GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
           G  ++ DE   +   F   + DKP E+RPAR   ++ +    DP
Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367


>AE013599-1043|AAF58828.1|  459|Drosophila melanogaster CG12214-PA,
           isoform A protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 25  GYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 68
           G  ++ DE   +   F   + DKP E+RPAR   ++ +    DP
Sbjct: 324 GGKISSDERVDSERAFVRYYMDKPEEERPARYQELLQIHGKLDP 367


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,004,970
Number of Sequences: 52641
Number of extensions: 320286
Number of successful extensions: 889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 11
length of query: 162
length of database: 24,830,863
effective HSP length: 79
effective length of query: 83
effective length of database: 20,672,224
effective search space: 1715794592
effective search space used: 1715794592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)

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