Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
(162 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical ... 272 8e-74
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 27 4.9
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 27 4.9
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical ... 27 6.5
AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical ... 27 6.5
AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical ... 27 6.5
Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical
protein H27M09.2 protein.
Length = 211
Score = 272 bits (667), Expect = 8e-74
Identities = 122/161 (75%), Positives = 144/161 (89%)
Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 121
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 122 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLAR
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLAR 163
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 30.3 bits (65), Expect = 0.70
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 39 QFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE-- 96
Q KE++ D SE + R ++ + A N+D D++ + E +I +K ++QE
Sbjct: 315 QMKEKYEDLKSEAKLLRERVVEMEAKNEDLDDRISKY---EIEIRSNPLKKKAIQLQETL 371
Query: 97 ----ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 152
+ + + +Q+ ++P A + + K L ++L++ +H+ V + I L
Sbjct: 372 DTLKKQEEKLMEDMQSALTPEAWRDKMSENMKQ-----LNADLVVIEKQHKTVKDQISLA 426
Query: 153 PDEKQE 158
+E E
Sbjct: 427 SEELHE 432
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 41 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 97
++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523
Query: 98 NI 99
I
Sbjct: 524 MI 525
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKT 89
D E +E+ +K L V +D T F +FP +KIG+ IK+
Sbjct: 23 DDVFEDDEEEVTKGSDDKEEFVPSLFVAPKLSDKSTPNFFDYFPVGSKIGLTWIKS 78
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 41 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 97
++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523
Query: 98 NI 99
I
Sbjct: 524 MI 525
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQM 72
+ ++L + LE+ E K E++ R D + +DD +D M
Sbjct: 409 IANNDLGEILEKLPEHASTKSPEQKRGRKDSAISCETSDDISDSM 453
>AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical
protein F32B5.6d protein.
Length = 301
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 159 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 218
Query: 153 PDEKQEL 159
E Q++
Sbjct: 219 THELQQM 225
>AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical
protein F32B5.6b protein.
Length = 400
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349
Query: 153 PDEKQEL 159
E Q++
Sbjct: 350 THELQQM 356
>AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical
protein F32B5.6a protein.
Length = 432
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349
Query: 153 PDEKQEL 159
E Q++
Sbjct: 350 THELQQM 356
>Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical
protein W09C5.7 protein.
Length = 783
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 130 FLESELLINITEHEL 144
F+E+EL++NI EHEL
Sbjct: 257 FVETELILNIFEHEL 271
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,154,955
Number of Sequences: 27539
Number of extensions: 167882
Number of successful extensions: 472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 10
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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