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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase
subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like,
IPR005571|RNA polymerase Rpb5, N-terminal
         (162 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006665-4|AAF39906.1|  211|Caenorhabditis elegans Hypothetical ...   272   8e-74
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    30   0.70 
Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      27   4.9  
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF003148-4|AAR25646.1|  301|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF003148-2|AAR25645.1|  400|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF003148-1|AAR25644.1|  432|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z82077-5|CAB63333.1|  783|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC006665-4|AAF39906.1|  211|Caenorhabditis elegans Hypothetical
           protein H27M09.2 protein.
          Length = 211

 Score =  272 bits (667), Expect = 8e-74
 Identities = 122/161 (75%), Positives = 144/161 (89%)

Query: 2   DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
           DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62

Query: 62  VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 121
           VAHNDDP DQMFVFFP++AKIGIKTIK  C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63  VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122

Query: 122 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162
           APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLAR
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLAR 163


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 39  QFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE-- 96
           Q KE++ D  SE +  R  ++ + A N+D  D++  +   E +I    +K    ++QE  
Sbjct: 315 QMKEKYEDLKSEAKLLRERVVEMEAKNEDLDDRISKY---EIEIRSNPLKKKAIQLQETL 371

Query: 97  ----ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 152
               +   + +  +Q+ ++P A +  +    K      L ++L++   +H+ V + I L 
Sbjct: 372 DTLKKQEEKLMEDMQSALTPEAWRDKMSENMKQ-----LNADLVVIEKQHKTVKDQISLA 426

Query: 153 PDEKQE 158
            +E  E
Sbjct: 427 SEELHE 432


>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 41  KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 97
           ++QF D  +E+   RS+ IV++ +  NDD  DQ    FP  + K+   +I  +  R    
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523

Query: 98  NI 99
            I
Sbjct: 524 MI 525


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
          protein ZK632.6 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKT 89
          D   E  +E+      +K      L V    +D  T   F +FP  +KIG+  IK+
Sbjct: 23 DDVFEDDEEEVTKGSDDKEEFVPSLFVAPKLSDKSTPNFFDYFPVGSKIGLTWIKS 78


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 41  KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 97
           ++QF D  +E+   RS+ IV++ +  NDD  DQ    FP  + K+   +I  +  R    
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523

Query: 98  NI 99
            I
Sbjct: 524 MI 525


>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
           protein F11E6.7 protein.
          Length = 1011

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28  VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQM 72
           +  ++L + LE+  E    K  E++  R D  +    +DD +D M
Sbjct: 409 IANNDLGEILEKLPEHASTKSPEQKRGRKDSAISCETSDDISDSM 453


>AF003148-4|AAR25646.1|  301|Caenorhabditis elegans Hypothetical
           protein F32B5.6d protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 96  EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152
           E  I + ++ +QA M PS  + L+ ++ KY   IL+  +   L+  I  +   P+ +V  
Sbjct: 159 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 218

Query: 153 PDEKQEL 159
             E Q++
Sbjct: 219 THELQQM 225


>AF003148-2|AAR25645.1|  400|Caenorhabditis elegans Hypothetical
           protein F32B5.6b protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 96  EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152
           E  I + ++ +QA M PS  + L+ ++ KY   IL+  +   L+  I  +   P+ +V  
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349

Query: 153 PDEKQEL 159
             E Q++
Sbjct: 350 THELQQM 356


>AF003148-1|AAR25644.1|  432|Caenorhabditis elegans Hypothetical
           protein F32B5.6a protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 96  EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152
           E  I + ++ +QA M PS  + L+ ++ KY   IL+  +   L+  I  +   P+ +V  
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349

Query: 153 PDEKQEL 159
             E Q++
Sbjct: 350 THELQQM 356


>Z82077-5|CAB63333.1|  783|Caenorhabditis elegans Hypothetical
           protein W09C5.7 protein.
          Length = 783

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/15 (66%), Positives = 14/15 (93%)

Query: 130 FLESELLINITEHEL 144
           F+E+EL++NI EHEL
Sbjct: 257 FVETELILNIFEHEL 271


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,154,955
Number of Sequences: 27539
Number of extensions: 167882
Number of successful extensions: 472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 10
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)

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