BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001898-TA|BGIBMGA001898-PA|IPR000783|RNA polymerase subunit, RPB5, IPR009026|RNA polymerase subunit, RPB5/RPB6-like, IPR005571|RNA polymerase Rpb5, N-terminal (162 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical ... 272 8e-74 U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 30 0.70 Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 27 4.9 Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 27 4.9 AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 27 4.9 Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 27 6.5 AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical ... 27 6.5 AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical ... 27 6.5 AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical ... 27 6.5 Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical pr... 27 8.6 >AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical protein H27M09.2 protein. Length = 211 Score = 272 bits (667), Expect = 8e-74 Identities = 122/161 (75%), Positives = 144/161 (89%) Query: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61 DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62 Query: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 121 VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122 Query: 122 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 162 APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLAR Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLAR 163 >U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical protein C18H9.8 protein. Length = 674 Score = 30.3 bits (65), Expect = 0.70 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 14/126 (11%) Query: 39 QFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE-- 96 Q KE++ D SE + R ++ + A N+D D++ + E +I +K ++QE Sbjct: 315 QMKEKYEDLKSEAKLLRERVVEMEAKNEDLDDRISKY---EIEIRSNPLKKKAIQLQETL 371 Query: 97 ----ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 152 + + + +Q+ ++P A + + K L ++L++ +H+ V + I L Sbjct: 372 DTLKKQEEKLMEDMQSALTPEAWRDKMSENMKQ-----LNADLVVIEKQHKTVKDQISLA 426 Query: 153 PDEKQE 158 +E E Sbjct: 427 SEELHE 432 >Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical protein F02D10.5 protein. Length = 638 Score = 27.5 bits (58), Expect = 4.9 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 41 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 97 ++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523 Query: 98 NI 99 I Sbjct: 524 MI 525 >Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical protein ZK632.6 protein. Length = 619 Score = 27.5 bits (58), Expect = 4.9 Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 34 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKT 89 D E +E+ +K L V +D T F +FP +KIG+ IK+ Sbjct: 23 DDVFEDDEEEVTKGSDDKEEFVPSLFVAPKLSDKSTPNFFDYFPVGSKIGLTWIKS 78 >AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. Length = 638 Score = 27.5 bits (58), Expect = 4.9 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 41 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 97 ++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523 Query: 98 NI 99 I Sbjct: 524 MI 525 >Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical protein F11E6.7 protein. Length = 1011 Score = 27.1 bits (57), Expect = 6.5 Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 28 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQM 72 + ++L + LE+ E K E++ R D + +DD +D M Sbjct: 409 IANNDLGEILEKLPEHASTKSPEQKRGRKDSAISCETSDDISDSM 453 >AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical protein F32B5.6d protein. Length = 301 Score = 27.1 bits (57), Expect = 6.5 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152 E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V Sbjct: 159 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 218 Query: 153 PDEKQEL 159 E Q++ Sbjct: 219 THELQQM 225 >AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical protein F32B5.6b protein. Length = 400 Score = 27.1 bits (57), Expect = 6.5 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152 E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349 Query: 153 PDEKQEL 159 E Q++ Sbjct: 350 THELQQM 356 >AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical protein F32B5.6a protein. Length = 432 Score = 27.1 bits (57), Expect = 6.5 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 96 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 152 E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349 Query: 153 PDEKQEL 159 E Q++ Sbjct: 350 THELQQM 356 >Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical protein W09C5.7 protein. Length = 783 Score = 26.6 bits (56), Expect = 8.6 Identities = 10/15 (66%), Positives = 14/15 (93%) Query: 130 FLESELLINITEHEL 144 F+E+EL++NI EHEL Sbjct: 257 FVETELILNIFEHEL 271 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,154,955 Number of Sequences: 27539 Number of extensions: 167882 Number of successful extensions: 472 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 466 Number of HSP's gapped (non-prelim): 10 length of query: 162 length of database: 12,573,161 effective HSP length: 76 effective length of query: 86 effective length of database: 10,480,197 effective search space: 901296942 effective search space used: 901296942 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 56 (26.6 bits)
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