Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
         (478 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...   355   3e-98
U00031-10|AAK18872.2|  460|Caenorhabditis elegans Hypothetical p...    78   1e-14
Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical pr...    29   9.5  
Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical pr...    29   9.5  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   9.5  

>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score =  355 bits (874), Expect = 3e-98
 Identities = 187/484 (38%), Positives = 273/484 (56%), Gaps = 17/484 (3%)

Query: 2   GTRKVPVTTYVFGPSNPDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRR 61
           G  + P+ TY+ GP+NP + + Y EE  E   N+ Y+G++GL NT++ ++IAYL+G+   
Sbjct: 58  GNIEFPIPTYILGPANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYLSGVE-- 115

Query: 62  ELGKDVPMCTYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRL 121
             G    +  ++ +D   +       Q  F G D+L+T++WP+ I +         Q   
Sbjct: 116 --GSSKDLSCFDKADVEELLIP-LGTQVGFSGTDILLTSVWPADIARHSHNQPSKPQPG- 171

Query: 122 SDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNLKEKW 181
           S LLS LA H+KPRYHF       +ERQPYRN  +  +     TRFI LA +GN  K+KW
Sbjct: 172 SVLLSKLAAHLKPRYHFA-GLGVHYERQPYRNHRVLLEPARHTTRFIGLAAIGNPEKQKW 230

Query: 182 IYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVV-KFTGNGQ------FFF 234
           +YAC+++P+ KM   +L     + +  PY  E+L++    + + +  GNGQ      + F
Sbjct: 231 LYACNVKPMRKMEKEELTAQPPNASEFPYR-ELLEEIAAKETLSRMNGNGQRPEGSQYRF 289

Query: 235 DMNAPDDDQGK-RKRGTDKPESKKRNIEPE-ECWFCLSSPKVESHLVICVGTLCYLALAK 292
           +M   +D  G  RKR  D      RN +P   CWFCLS+   E HLV+ +G  CY A+ K
Sbjct: 290 EMGGAEDGAGNGRKRHNDGGNDGPRNKQPVGPCWFCLSNVDAEKHLVVAIGNKCYAAMPK 349

Query: 293 GPLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTSHM 352
           GPLT  HV++L + H QS   AP +V  EI KFK             +V FERN+RT H+
Sbjct: 350 GPLTEDHVMVLSVGHIQSQVSAPVEVRDEIEKFKSAFTLMANKQGKALVTFERNFRTQHL 409

Query: 353 QIQCVPVPRASELQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQI 412
           Q+Q V + ++S   +   F   A  A  ++  + P   +  +   G PYF AELP G ++
Sbjct: 410 QVQMVMIDKSSSKALKSSFTTAAACAGFELVTMGPDESLLDMVNEGCPYFVAELPDGSKL 469

Query: 413 YAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVE 472
           + ++ + FPL FGR+VL+S PIL+CEDK DW+ C L KE+E + V   ++ FKPFDFT E
Sbjct: 470 FTRSMKGFPLHFGREVLASTPILDCEDKVDWKACVLAKEKEVELVNKLKSDFKPFDFTAE 529

Query: 473 DDSD 476
           DDSD
Sbjct: 530 DDSD 533


>U00031-10|AAK18872.2|  460|Caenorhabditis elegans Hypothetical
           protein B0361.2a protein.
          Length = 460

 Score = 78.2 bits (184), Expect = 1e-14
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 240 DDDQGKRKRGTDKPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK-GPLTPY 298
           D+   KRK      E K+     ++C  C+ S +++ H +I VG   YLA+ +   L   
Sbjct: 214 DEKDKKRKEKESIKEHKRIERSFDDCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDE 273

Query: 299 HVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTS---HMQIQ 355
           H++I+P QH  ST +  ++V  E+  ++  L   + + N   +FFE +       H+ I+
Sbjct: 274 HLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHVDSNPHVFIE 333

Query: 356 CVPVPRASELQILEVFQ---DEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAE--LPSGE 410
           CVPV +         F+   +E     +  + L    ++R+    G  YF  +  L +G 
Sbjct: 334 CVPVEQEIGDMASIYFKKAINECEGEYMDNKKLIETKDLRRQIPKGFSYFAVDFGLSNGF 393

Query: 411 QIYAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVA-NFRAKFKPFDF 469
               ++  HFP  F  ++++   +L+   K  WR+ +  +  ++K  A NF+  ++P D+
Sbjct: 394 AHVIESHDHFPSTFATEIIAG--MLDLPPK-KWRKRETDEMSKQKSRAENFKKLWEPVDW 450

Query: 470 TVEDDSDS 477
           T    +DS
Sbjct: 451 TKRLKNDS 458


>Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical
           protein F14F8.6 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 327 DTLKKFYATMNMGVVFFERNYRTSHMQIQCVPVPRASELQILEVF 371
           D ++     + +  +F+ R Y + H++++C P P   E+ I+ VF
Sbjct: 84  DFVRMMSTIVTLSPIFY-REYLSLHVRLKCQPPPSYLEMYIIYVF 127


>Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical
           protein F40D4.12 protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 435 LNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSD 476
           L  E+K   R C+L +E E KH   FR   + + +  E +SD
Sbjct: 475 LELEEKI--RHCELCQETENKHRNEFRKLLQKYRWNFECESD 514


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 134 PRYHFVPSKDKFFERQPYRNQS 155
           PRYH  P +D+F +R P R  S
Sbjct: 131 PRYHSGPREDRFSDRNPPREHS 152


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,289
Number of Sequences: 27539
Number of extensions: 623704
Number of successful extensions: 1283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 5
length of query: 478
length of database: 12,573,161
effective HSP length: 84
effective length of query: 394
effective length of database: 10,259,885
effective search space: 4042394690
effective search space used: 4042394690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)