GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
         (478 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.67 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.67 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   8.2  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 294 PLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKK 331
           PL  + VL+      Q      D  +KE+  F++TLKK
Sbjct: 249 PLMDFSVLVEACGVLQQEPHRRDAFLKEVADFQETLKK 286


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 294 PLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKK 331
           PL  + VL+      Q      D  +KE+  F++TLKK
Sbjct: 249 PLMDFSVLVEACGVLQQEPHRRDAFLKEVADFQETLKK 286


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 344 ERNYRTSHMQIQCVPVPRASELQILEVFQDEAGIASIQMEVL 385
           ER+ R +H+Q Q      A    +    Q+E G  S  +E+L
Sbjct: 72  ERDERLAHVQAQLGAAMGAVGTALTFCLQEEGGTTSQLIELL 113


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,130
Number of Sequences: 317
Number of extensions: 5717
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 478
length of database: 114,650
effective HSP length: 59
effective length of query: 419
effective length of database: 95,947
effective search space: 40201793
effective search space used: 40201793
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)