BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2 (478 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 165 2e-41 SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 57 5e-09 SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 35 0.029 SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 1.9 SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 28 3.3 SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 3.3 SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 27 4.4 SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 27 4.4 SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.4 SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 27 5.8 SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 7.6 SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 7.6 >SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 561 Score = 165 bits (400), Expect = 2e-41 Identities = 146/513 (28%), Positives = 224/513 (43%), Gaps = 65/513 (12%) Query: 5 KVPVTTYVFGPSN---PDHV-HHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSR 60 KVP+ Y FG P+ + H G E+ PN+ MG G T IA L G Sbjct: 67 KVPIPVY-FGVGTAGLPESIISHMAMYGPEVAPNLFCMGICGFMKTFYKFTIAQLGGSYN 125 Query: 61 RELGKDVPMCTYEPSDCSAVRDACFRG---QSEFRGVDVLITTLWPSGIQQDECQTVDVE 117 E P +E S + + CF Q + D+L ++ WP +Q++ + + Sbjct: 126 EEKYYQPPE-KFEQS----LNEKCFHRSDVQKLSKRCDILFSSEWPEDVQENSTLP-ERK 179 Query: 118 QDRLSDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNL 177 + L+ LA + P+Y FVP ++ER+PY+N + T F+ALAP N+ Sbjct: 180 LPKGCMPLAALAANCMPQYFFVPGP-VYYEREPYKNSAAINVNTGTVTHFVALAPFKNSK 238 Query: 178 KEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQ--------HQPGKVVKFTGN 229 EK+ YA +L P++ M T +P + P LK+ Q K K + Sbjct: 239 NEKFSYAFTLYPLTTEYMQPAPPNCT-ASPFEHRPIPLKRASEDQIIPQQTNKFHKSKSS 297 Query: 230 GQFFFDMNAPDDDQGKRKRGTD--------KPES------KKRNIEPEECWFCLSSPKVE 275 F K + K ES ++ + P C+FCLS+P V Sbjct: 298 TALFKSKKDSSSSLNKMHKSESHSALNNLHKSESGTSLNNRRSKVGPGSCFFCLSNPNVA 357 Query: 276 SHLVICVGTLCYLALAKGPLTPY-----------HVLILPIQHHQSTTRAPD----DVIK 320 HL++ +G Y+AL KGPLT HVLI+PI H + + D + Sbjct: 358 LHLIVAIGNEAYMALPKGPLTTTASNTPALASSGHVLIIPIAHASALSTLSDTSYEKTLN 417 Query: 321 EITKFKDTLKKFYATMNMGVVFFERNYRTS-HMQIQCVPVPRASELQILEVFQDEAGIAS 379 E+ +F+ + Y + + +E + H+ Q +P+P+ S +I VF + A A Sbjct: 418 EMNRFRKAVTDMYNACDSDALVYEISRANGVHLHWQMIPIPKISSHRIESVFLEMAKEAG 477 Query: 380 IQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIY--AKTKQHFPLQFGRDVLSSPPILNC 437 E R V YF LPSG+ + + ++ F LQFGR ++ IL Sbjct: 478 YDFEE-------RDVEPHELNYFRVFLPSGKILIHRLQLRERFDLQFGR--RAAAKILGL 528 Query: 438 EDKADWRQCQLTKEEEEKHVANFRAKFKPFDFT 470 ED+ DWR+C T++EE+ F+ FKP+DFT Sbjct: 529 EDRVDWRKCVQTEDEEKAESEAFKMCFKPYDFT 561 >SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosaccharomyces pombe|chr 1|||Manual Length = 639 Score = 57.2 bits (132), Expect = 5e-09 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 256 KKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGP-LTPYHVLILPIQHHQSTTRA 314 KK N + C CL+ VI + Y++L P L YH LI+P H +T Sbjct: 403 KKINHVLDTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSC 462 Query: 315 PDDVIKEITKFKDTLKKFYATMNMGVVFFER---NYRTSHMQIQCVPVPR 361 +D EI F + + +MN+GV+F+E R H I+C+PV + Sbjct: 463 DEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPSPQRYMHTAIECIPVSK 512 >SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 466 Score = 34.7 bits (76), Expect = 0.029 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 29/188 (15%) Query: 2 GTRKVPVTTYVFGPSNPDHVHHYCEE---GSEIVPNVIYMGRRGLFNTSTDVKIAYLTGL 58 G K P+ T G ++ +Y +E G + PN+ YMGR + N ++IA ++G+ Sbjct: 79 GRNKAPILTIFVGGNH--EASNYLDELPYGGWVAPNIYYMGRSSVINVG-GLRIAGISGI 135 Query: 59 SRRELGKDVPMCTYE--PSDCSAVRDACFRGQSEF-------RGVDVLITTLWPSGIQQ- 108 D YE P + ++ + + + +D+ ++ WP GI+Q Sbjct: 136 YS---AMDYKKGRYEGLPYNYKMLKSIYHTREFDVLSLKSLQKPIDIFLSHDWPRGIEQH 192 Query: 109 -DECQTV--------DVEQDRL-SDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQ 158 D + + +VE++ L S L L + +KPRY F + N Sbjct: 193 GDVAKLLRHKPFFRNEVERNDLGSPALEELLVELKPRYWMAAHLHTKFTAVVHHNSQEDD 252 Query: 159 DYRECATR 166 C+++ Sbjct: 253 GKLSCSSK 260 >SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex subunit 8|Schizosaccharomyces pombe|chr 2|||Manual Length = 214 Score = 28.7 bits (61), Expect = 1.9 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 240 DDDQGKRKRGTDKPESKKRNIEPEE 264 DD +G + +G D+ E KK I+P E Sbjct: 75 DDAKGAQGKGADEKEEKKETIQPPE 99 >SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosaccharomyces pombe|chr 2|||Manual Length = 548 Score = 27.9 bits (59), Expect = 3.3 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 182 IYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKV 223 I + + SK+RM +L+Q+ TP P+ K H P K+ Sbjct: 403 ISSTPISAASKVRM-NLMQSNQTPTPAPFSIAAKKSHLPSKL 443 >SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |Schizosaccharomyces pombe|chr 1|||Manual Length = 649 Score = 27.9 bits (59), Expect = 3.3 Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 424 FGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSD 476 FG V P + +++D+RQ ++ K +++K ++ R + D E+++D Sbjct: 264 FGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENENEND 316 >SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 431 Score = 27.5 bits (58), Expect = 4.4 Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 172 PVGNNLKEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVVKF 226 P+G + + + A I + + D + TD P PY E++ G+++ F Sbjct: 203 PIGASHDDLIVLARRYYDIEERKSQDKVTNITDSQPAPYMKEIIHLWSDGRLIDF 257 >SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 27.5 bits (58), Expect = 4.4 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 234 FDMNAPDDDQGKRKRGTDKPESKKR-NIEPEE 264 F M DDD KRKR K E KK+ I+ EE Sbjct: 424 FKMYKNDDDTKKRKRKKKKKEVKKKARIQGEE 455 >SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 143 Score = 27.5 bits (58), Expect = 4.4 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 365 LQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQF 424 +++++ QD +V+ PYSE+ + + FH E S E++ +T L Sbjct: 1 MELIKKIQDRDAAEKAYYDVIEPYSELLEFS------FHKEFVSEEKVTQRTASSDSLNT 54 Query: 425 GRDVLSSPPILNCED-KADWRQCQLTKEEEEK 455 + ++N E+ + R C L + +K Sbjct: 55 IASENNDENVINLEEFRQLKRNCDLYQRNLQK 86 >SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1185 Score = 27.1 bits (57), Expect = 5.8 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 144 KFFERQPYRNQSMHQDYRECAT---RFIALAPVGNNLKEKWIY 183 KFF +P N+ MH + + T +F+AL P+ ++ +Y Sbjct: 1040 KFFLSRPEMNEEMHVEIDQGKTLIVKFVALGPLNPRTGQREVY 1082 >SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizosaccharomyces pombe|chr 1|||Manual Length = 532 Score = 26.6 bits (56), Expect = 7.6 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 381 QMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQFGRDVLSSPPIL 435 QM ++ P S I+ + P+F A+LP+ ++ ++T R V SPP L Sbjct: 253 QMLMVLPTSRIKVAEIMQHPWFIADLPTHSRLPSRTSSFSSKH--RSVTFSPPDL 305 >SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1297 Score = 26.6 bits (56), Expect = 7.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 221 GKVVKFTGNGQFFFDMNAPDD 241 G +V GNG F+FD + P+D Sbjct: 716 GTLVTAIGNGLFYFDNSLPED 736 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.320 0.136 0.424 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,420,344 Number of Sequences: 5004 Number of extensions: 109288 Number of successful extensions: 270 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 14 length of query: 478 length of database: 2,362,478 effective HSP length: 75 effective length of query: 403 effective length of database: 1,987,178 effective search space: 800832734 effective search space used: 800832734 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 56 (26.6 bits)
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