Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 165 2e-41
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 57 5e-09
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 35 0.029
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 1.9
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 28 3.3
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 3.3
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 27 4.4
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 27 4.4
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.4
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 27 5.8
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 7.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 7.6
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 165 bits (400), Expect = 2e-41
Identities = 146/513 (28%), Positives = 224/513 (43%), Gaps = 65/513 (12%)
Query: 5 KVPVTTYVFGPSN---PDHV-HHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSR 60
KVP+ Y FG P+ + H G E+ PN+ MG G T IA L G
Sbjct: 67 KVPIPVY-FGVGTAGLPESIISHMAMYGPEVAPNLFCMGICGFMKTFYKFTIAQLGGSYN 125
Query: 61 RELGKDVPMCTYEPSDCSAVRDACFRG---QSEFRGVDVLITTLWPSGIQQDECQTVDVE 117
E P +E S + + CF Q + D+L ++ WP +Q++ + +
Sbjct: 126 EEKYYQPPE-KFEQS----LNEKCFHRSDVQKLSKRCDILFSSEWPEDVQENSTLP-ERK 179
Query: 118 QDRLSDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNL 177
+ L+ LA + P+Y FVP ++ER+PY+N + T F+ALAP N+
Sbjct: 180 LPKGCMPLAALAANCMPQYFFVPGP-VYYEREPYKNSAAINVNTGTVTHFVALAPFKNSK 238
Query: 178 KEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQ--------HQPGKVVKFTGN 229
EK+ YA +L P++ M T +P + P LK+ Q K K +
Sbjct: 239 NEKFSYAFTLYPLTTEYMQPAPPNCT-ASPFEHRPIPLKRASEDQIIPQQTNKFHKSKSS 297
Query: 230 GQFFFDMNAPDDDQGKRKRGTD--------KPES------KKRNIEPEECWFCLSSPKVE 275
F K + K ES ++ + P C+FCLS+P V
Sbjct: 298 TALFKSKKDSSSSLNKMHKSESHSALNNLHKSESGTSLNNRRSKVGPGSCFFCLSNPNVA 357
Query: 276 SHLVICVGTLCYLALAKGPLTPY-----------HVLILPIQHHQSTTRAPD----DVIK 320
HL++ +G Y+AL KGPLT HVLI+PI H + + D +
Sbjct: 358 LHLIVAIGNEAYMALPKGPLTTTASNTPALASSGHVLIIPIAHASALSTLSDTSYEKTLN 417
Query: 321 EITKFKDTLKKFYATMNMGVVFFERNYRTS-HMQIQCVPVPRASELQILEVFQDEAGIAS 379
E+ +F+ + Y + + +E + H+ Q +P+P+ S +I VF + A A
Sbjct: 418 EMNRFRKAVTDMYNACDSDALVYEISRANGVHLHWQMIPIPKISSHRIESVFLEMAKEAG 477
Query: 380 IQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIY--AKTKQHFPLQFGRDVLSSPPILNC 437
E R V YF LPSG+ + + ++ F LQFGR ++ IL
Sbjct: 478 YDFEE-------RDVEPHELNYFRVFLPSGKILIHRLQLRERFDLQFGR--RAAAKILGL 528
Query: 438 EDKADWRQCQLTKEEEEKHVANFRAKFKPFDFT 470
ED+ DWR+C T++EE+ F+ FKP+DFT
Sbjct: 529 EDRVDWRKCVQTEDEEKAESEAFKMCFKPYDFT 561
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 57.2 bits (132), Expect = 5e-09
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 256 KKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGP-LTPYHVLILPIQHHQSTTRA 314
KK N + C CL+ VI + Y++L P L YH LI+P H +T
Sbjct: 403 KKINHVLDTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSC 462
Query: 315 PDDVIKEITKFKDTLKKFYATMNMGVVFFER---NYRTSHMQIQCVPVPR 361
+D EI F + + +MN+GV+F+E R H I+C+PV +
Sbjct: 463 DEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPSPQRYMHTAIECIPVSK 512
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 34.7 bits (76), Expect = 0.029
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 2 GTRKVPVTTYVFGPSNPDHVHHYCEE---GSEIVPNVIYMGRRGLFNTSTDVKIAYLTGL 58
G K P+ T G ++ +Y +E G + PN+ YMGR + N ++IA ++G+
Sbjct: 79 GRNKAPILTIFVGGNH--EASNYLDELPYGGWVAPNIYYMGRSSVINVG-GLRIAGISGI 135
Query: 59 SRRELGKDVPMCTYE--PSDCSAVRDACFRGQSEF-------RGVDVLITTLWPSGIQQ- 108
D YE P + ++ + + + +D+ ++ WP GI+Q
Sbjct: 136 YS---AMDYKKGRYEGLPYNYKMLKSIYHTREFDVLSLKSLQKPIDIFLSHDWPRGIEQH 192
Query: 109 -DECQTV--------DVEQDRL-SDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQ 158
D + + +VE++ L S L L + +KPRY F + N
Sbjct: 193 GDVAKLLRHKPFFRNEVERNDLGSPALEELLVELKPRYWMAAHLHTKFTAVVHHNSQEDD 252
Query: 159 DYRECATR 166
C+++
Sbjct: 253 GKLSCSSK 260
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 240 DDDQGKRKRGTDKPESKKRNIEPEE 264
DD +G + +G D+ E KK I+P E
Sbjct: 75 DDAKGAQGKGADEKEEKKETIQPPE 99
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 182 IYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKV 223
I + + SK+RM +L+Q+ TP P+ K H P K+
Sbjct: 403 ISSTPISAASKVRM-NLMQSNQTPTPAPFSIAAKKSHLPSKL 443
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 424 FGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSD 476
FG V P + +++D+RQ ++ K +++K ++ R + D E+++D
Sbjct: 264 FGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENENEND 316
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 172 PVGNNLKEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVVKF 226
P+G + + + A I + + D + TD P PY E++ G+++ F
Sbjct: 203 PIGASHDDLIVLARRYYDIEERKSQDKVTNITDSQPAPYMKEIIHLWSDGRLIDF 257
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 234 FDMNAPDDDQGKRKRGTDKPESKKR-NIEPEE 264
F M DDD KRKR K E KK+ I+ EE
Sbjct: 424 FKMYKNDDDTKKRKRKKKKKEVKKKARIQGEE 455
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 365 LQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQF 424
+++++ QD +V+ PYSE+ + + FH E S E++ +T L
Sbjct: 1 MELIKKIQDRDAAEKAYYDVIEPYSELLEFS------FHKEFVSEEKVTQRTASSDSLNT 54
Query: 425 GRDVLSSPPILNCED-KADWRQCQLTKEEEEK 455
+ ++N E+ + R C L + +K
Sbjct: 55 IASENNDENVINLEEFRQLKRNCDLYQRNLQK 86
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 144 KFFERQPYRNQSMHQDYRECAT---RFIALAPVGNNLKEKWIY 183
KFF +P N+ MH + + T +F+AL P+ ++ +Y
Sbjct: 1040 KFFLSRPEMNEEMHVEIDQGKTLIVKFVALGPLNPRTGQREVY 1082
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 381 QMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQFGRDVLSSPPIL 435
QM ++ P S I+ + P+F A+LP+ ++ ++T R V SPP L
Sbjct: 253 QMLMVLPTSRIKVAEIMQHPWFIADLPTHSRLPSRTSSFSSKH--RSVTFSPPDL 305
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 221 GKVVKFTGNGQFFFDMNAPDD 241
G +V GNG F+FD + P+D
Sbjct: 716 GTLVTAIGNGLFYFDNSLPED 736
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,344
Number of Sequences: 5004
Number of extensions: 109288
Number of successful extensions: 270
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 14
length of query: 478
length of database: 2,362,478
effective HSP length: 75
effective length of query: 403
effective length of database: 1,987,178
effective search space: 800832734
effective search space used: 800832734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -