SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...   165   2e-41
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    57   5e-09
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    35   0.029
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    29   1.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    28   3.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    28   3.3  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    27   4.4  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    27   4.4  
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.4  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   5.8  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   7.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   7.6  

>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score =  165 bits (400), Expect = 2e-41
 Identities = 146/513 (28%), Positives = 224/513 (43%), Gaps = 65/513 (12%)

Query: 5   KVPVTTYVFGPSN---PDHV-HHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSR 60
           KVP+  Y FG      P+ +  H    G E+ PN+  MG  G   T     IA L G   
Sbjct: 67  KVPIPVY-FGVGTAGLPESIISHMAMYGPEVAPNLFCMGICGFMKTFYKFTIAQLGGSYN 125

Query: 61  RELGKDVPMCTYEPSDCSAVRDACFRG---QSEFRGVDVLITTLWPSGIQQDECQTVDVE 117
            E     P   +E S    + + CF     Q   +  D+L ++ WP  +Q++     + +
Sbjct: 126 EEKYYQPPE-KFEQS----LNEKCFHRSDVQKLSKRCDILFSSEWPEDVQENSTLP-ERK 179

Query: 118 QDRLSDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNL 177
             +    L+ LA +  P+Y FVP    ++ER+PY+N +         T F+ALAP  N+ 
Sbjct: 180 LPKGCMPLAALAANCMPQYFFVPGP-VYYEREPYKNSAAINVNTGTVTHFVALAPFKNSK 238

Query: 178 KEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQ--------HQPGKVVKFTGN 229
            EK+ YA +L P++   M       T  +P  + P  LK+         Q  K  K   +
Sbjct: 239 NEKFSYAFTLYPLTTEYMQPAPPNCT-ASPFEHRPIPLKRASEDQIIPQQTNKFHKSKSS 297

Query: 230 GQFFFDMNAPDDDQGKRKRGTD--------KPES------KKRNIEPEECWFCLSSPKVE 275
              F           K  +           K ES      ++  + P  C+FCLS+P V 
Sbjct: 298 TALFKSKKDSSSSLNKMHKSESHSALNNLHKSESGTSLNNRRSKVGPGSCFFCLSNPNVA 357

Query: 276 SHLVICVGTLCYLALAKGPLTPY-----------HVLILPIQHHQSTTRAPD----DVIK 320
            HL++ +G   Y+AL KGPLT             HVLI+PI H  + +   D      + 
Sbjct: 358 LHLIVAIGNEAYMALPKGPLTTTASNTPALASSGHVLIIPIAHASALSTLSDTSYEKTLN 417

Query: 321 EITKFKDTLKKFYATMNMGVVFFERNYRTS-HMQIQCVPVPRASELQILEVFQDEAGIAS 379
           E+ +F+  +   Y   +   + +E +     H+  Q +P+P+ S  +I  VF + A  A 
Sbjct: 418 EMNRFRKAVTDMYNACDSDALVYEISRANGVHLHWQMIPIPKISSHRIESVFLEMAKEAG 477

Query: 380 IQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIY--AKTKQHFPLQFGRDVLSSPPILNC 437
              E        R V      YF   LPSG+ +    + ++ F LQFGR   ++  IL  
Sbjct: 478 YDFEE-------RDVEPHELNYFRVFLPSGKILIHRLQLRERFDLQFGR--RAAAKILGL 528

Query: 438 EDKADWRQCQLTKEEEEKHVANFRAKFKPFDFT 470
           ED+ DWR+C  T++EE+     F+  FKP+DFT
Sbjct: 529 EDRVDWRKCVQTEDEEKAESEAFKMCFKPYDFT 561


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 256 KKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGP-LTPYHVLILPIQHHQSTTRA 314
           KK N   + C  CL+        VI +    Y++L   P L  YH LI+P  H  +T   
Sbjct: 403 KKINHVLDTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSC 462

Query: 315 PDDVIKEITKFKDTLKKFYATMNMGVVFFER---NYRTSHMQIQCVPVPR 361
            +D   EI  F   +   + +MN+GV+F+E      R  H  I+C+PV +
Sbjct: 463 DEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPSPQRYMHTAIECIPVSK 512


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 29/188 (15%)

Query: 2   GTRKVPVTTYVFGPSNPDHVHHYCEE---GSEIVPNVIYMGRRGLFNTSTDVKIAYLTGL 58
           G  K P+ T   G ++     +Y +E   G  + PN+ YMGR  + N    ++IA ++G+
Sbjct: 79  GRNKAPILTIFVGGNH--EASNYLDELPYGGWVAPNIYYMGRSSVINVG-GLRIAGISGI 135

Query: 59  SRRELGKDVPMCTYE--PSDCSAVRDACFRGQSEF-------RGVDVLITTLWPSGIQQ- 108
                  D     YE  P +   ++      + +        + +D+ ++  WP GI+Q 
Sbjct: 136 YS---AMDYKKGRYEGLPYNYKMLKSIYHTREFDVLSLKSLQKPIDIFLSHDWPRGIEQH 192

Query: 109 -DECQTV--------DVEQDRL-SDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQ 158
            D  + +        +VE++ L S  L  L + +KPRY         F    + N     
Sbjct: 193 GDVAKLLRHKPFFRNEVERNDLGSPALEELLVELKPRYWMAAHLHTKFTAVVHHNSQEDD 252

Query: 159 DYRECATR 166
               C+++
Sbjct: 253 GKLSCSSK 260


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 240 DDDQGKRKRGTDKPESKKRNIEPEE 264
           DD +G + +G D+ E KK  I+P E
Sbjct: 75  DDAKGAQGKGADEKEEKKETIQPPE 99


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 182 IYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKV 223
           I +  +   SK+RM +L+Q+    TP P+     K H P K+
Sbjct: 403 ISSTPISAASKVRM-NLMQSNQTPTPAPFSIAAKKSHLPSKL 443


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 424 FGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSD 476
           FG  V    P +   +++D+RQ ++ K +++K  ++ R +    D   E+++D
Sbjct: 264 FGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENENEND 316


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 172 PVGNNLKEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVVKF 226
           P+G +  +  + A     I + +  D +   TD  P PY  E++     G+++ F
Sbjct: 203 PIGASHDDLIVLARRYYDIEERKSQDKVTNITDSQPAPYMKEIIHLWSDGRLIDF 257


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 234 FDMNAPDDDQGKRKRGTDKPESKKR-NIEPEE 264
           F M   DDD  KRKR   K E KK+  I+ EE
Sbjct: 424 FKMYKNDDDTKKRKRKKKKKEVKKKARIQGEE 455


>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 143

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 365 LQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQF 424
           +++++  QD         +V+ PYSE+ + +      FH E  S E++  +T     L  
Sbjct: 1   MELIKKIQDRDAAEKAYYDVIEPYSELLEFS------FHKEFVSEEKVTQRTASSDSLNT 54

Query: 425 GRDVLSSPPILNCED-KADWRQCQLTKEEEEK 455
                +   ++N E+ +   R C L +   +K
Sbjct: 55  IASENNDENVINLEEFRQLKRNCDLYQRNLQK 86


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 144  KFFERQPYRNQSMHQDYRECAT---RFIALAPVGNNLKEKWIY 183
            KFF  +P  N+ MH +  +  T   +F+AL P+     ++ +Y
Sbjct: 1040 KFFLSRPEMNEEMHVEIDQGKTLIVKFVALGPLNPRTGQREVY 1082


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 381 QMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQFGRDVLSSPPIL 435
           QM ++ P S I+   +   P+F A+LP+  ++ ++T         R V  SPP L
Sbjct: 253 QMLMVLPTSRIKVAEIMQHPWFIADLPTHSRLPSRTSSFSSKH--RSVTFSPPDL 305


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 221 GKVVKFTGNGQFFFDMNAPDD 241
           G +V   GNG F+FD + P+D
Sbjct: 716 GTLVTAIGNGLFYFDNSLPED 736


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,344
Number of Sequences: 5004
Number of extensions: 109288
Number of successful extensions: 270
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 14
length of query: 478
length of database: 2,362,478
effective HSP length: 75
effective length of query: 403
effective length of database: 1,987,178
effective search space: 800832734
effective search space used: 800832734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)

- SilkBase 1999-2023 -