GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   2e-30
SB_13462| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   3e-14
SB_19690| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.010
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.7  

>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score =  130 bits (315), Expect = 2e-30
 Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 19/234 (8%)

Query: 2   GTRKVPVTTYVFGPSNPDHVHHY----CEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTG 57
           G  + P+ TY+ GP++P+ + ++     E+G+E+  N+ Y+GR+G+  T + ++IAYL+G
Sbjct: 60  GELRAPIITYILGPNDPEEMKYFEADFLEDGTELCENITYLGRKGVLKTPSGLQIAYLSG 119

Query: 58  LSRRELGKDVPMCTYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQTVDVE 117
             + E  K    C +   D +++       +  F+GVD+L+T+ WP  + +   +  DVE
Sbjct: 120 TDKAEGLKGG--CVFSEQDVASLESKS--NEENFKGVDLLLTSCWPQDVAKFTKKPSDVE 175

Query: 118 Q-DRLSDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNN 176
                S  +S LA  +KPRYHFV  +   FER PYRN  + ++     TRFIAL+ +GN 
Sbjct: 176 TIPPGSTTVSQLASKLKPRYHFVGKEGIHFERVPYRNHQVLREPARHVTRFIALSYIGNP 235

Query: 177 LKEK---------WIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLK-QHQP 220
            K+K         ++YA ++ P+S M  + L +   D T  PY  ++   Q QP
Sbjct: 236 QKKKILTELLYFQYMYAFNIVPMSAMDSSKLTEQPDDVTENPYGKQVSNAQSQP 289


>SB_13462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 77.0 bits (181), Expect = 3e-14
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 22/228 (9%)

Query: 256 KKRNIEPEECWFCLSSPKVESHLVICVGTLCYLAL-AKGPLTPYHVLILPIQHHQSTTRA 314
           K+ + +  +C FC  +  ++ HL+I +G   YLAL     LT  H LI+P+QH  +TT  
Sbjct: 3   KRLSEQLSKCRFCFENTDLKKHLIIAIGIQTYLALPLHQSLTDGHCLIVPMQHSLATTLI 62

Query: 315 PDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTSHMQIQCVPVPRASELQILEVFQDE 374
            +DV  EI   KD    F  T            R +HM ++CVP+P+         F+  
Sbjct: 63  DEDVHDEI---KDRDVVFLETC-------RSLKRQNHMIVECVPIPKEDGDMAPIYFKKA 112

Query: 375 AGIASIQMEVLPPYSEIRQVTL-----PGAPYFHAE--LPSGEQIYAKTKQHFPLQFGRD 427
              A ++        + R  TL      G P+FH E  L  G     + ++ FP  FG++
Sbjct: 113 IMEADVEWAQNKRLIDTRDKTLRSSIPRGLPFFHVEFGLDGGFAHIIEDEELFPQYFGKE 172

Query: 428 VLSSPPILNCEDKADWRQCQLTKEEEEK-HVANFRAKFKPFDFTVEDD 474
           ++     L   D   WR+ +    +E K  V  F   +KP+D+T   D
Sbjct: 173 IIGGMLDL---DPYRWRKPRTESFQEHKTKVLQFAEWWKPYDWTQRID 217


>SB_19690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 38.7 bits (86), Expect = 0.010
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 287 YLALAKGPLTPYHVLILPIQHHQSTTR 313
           Y+ALAKG L P HVL+ PI H +ST +
Sbjct: 2   YVALAKGGLVPEHVLVCPIAHFESTVK 28


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 297 PYHVLILPIQHHQSTTR---APDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTSHMQ 353
           P  ++  P+ HHQS  R   +PD +I E T      ++   T+      +  NY+  H  
Sbjct: 799 PVELIFGPLLHHQSCWRSPTSPDTIILE-TFVGFEKRRVQITLTSYHRAYSLNYQMFHGY 857

Query: 354 IQCVPVPRASELQILEVFQDEAGIASIQMEVL 385
           I      R + L+ L  F   + IA + ++VL
Sbjct: 858 ILVYSAIRKASLETLSAF--ASSIAHVPIQVL 887


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,081
Number of Sequences: 59808
Number of extensions: 822913
Number of successful extensions: 1474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1465
Number of HSP's gapped (non-prelim): 4
length of query: 478
length of database: 16,821,457
effective HSP length: 85
effective length of query: 393
effective length of database: 11,737,777
effective search space: 4612946361
effective search space used: 4612946361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)