GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
         (478 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            27   0.84 
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   3.4  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   5.9  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 357  VPVPRASELQILEVFQDEAG-IASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAK 415
            +  P A +L   E +++ +G  +S     L  +    ++ L     +H   P GEQ++  
Sbjct: 3043 IDAPLAQKLIAPETYENSSGRYSSSGANSLGSFLSYLRIPLDWFLNYHENTPEGEQVHDN 3102

Query: 416  TKQHFPLQFGRDVLSSPPILNC 437
            T Q +   + R    S  I NC
Sbjct: 3103 TIQRYKSHYKRTSKHS-MIENC 3123


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 317 DVIKEITKFKDTLKKFYATMNMGVVFFERNYRT 349
           + I   TK  + LK F  TM++ V+F +  Y T
Sbjct: 24  NTISSATKL-EALKTFIRTMDLDVIFLQEVYHT 55


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 38  MGRRGLFNTSTDVKIAYLTGLSRRELGKDVPMCTYEPSDCSAVRDACFRGQSEFRG 93
           +G RGL     D+ +    GLS R+  + VP     P+  +A++    +G+  F G
Sbjct: 432 IGERGLMGEKGDMGLTGPVGLSGRKGDRGVPGSPGLPATVAAIKGD--KGEPGFPG 485


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,926
Number of Sequences: 2123
Number of extensions: 25177
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 4
length of query: 478
length of database: 516,269
effective HSP length: 67
effective length of query: 411
effective length of database: 374,028
effective search space: 153725508
effective search space used: 153725508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)