Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
(478 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 355 3e-98
U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical p... 78 1e-14
Z92782-5|CAB07190.1| 385|Caenorhabditis elegans Hypothetical pr... 29 9.5
Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical pr... 29 9.5
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 29 9.5
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 355 bits (874), Expect = 3e-98
Identities = 187/484 (38%), Positives = 273/484 (56%), Gaps = 17/484 (3%)
Query: 2 GTRKVPVTTYVFGPSNPDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRR 61
G + P+ TY+ GP+NP + + Y EE E N+ Y+G++GL NT++ ++IAYL+G+
Sbjct: 58 GNIEFPIPTYILGPANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYLSGVE-- 115
Query: 62 ELGKDVPMCTYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRL 121
G + ++ +D + Q F G D+L+T++WP+ I + Q
Sbjct: 116 --GSSKDLSCFDKADVEELLIP-LGTQVGFSGTDILLTSVWPADIARHSHNQPSKPQPG- 171
Query: 122 SDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNLKEKW 181
S LLS LA H+KPRYHF +ERQPYRN + + TRFI LA +GN K+KW
Sbjct: 172 SVLLSKLAAHLKPRYHFA-GLGVHYERQPYRNHRVLLEPARHTTRFIGLAAIGNPEKQKW 230
Query: 182 IYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVV-KFTGNGQ------FFF 234
+YAC+++P+ KM +L + + PY E+L++ + + + GNGQ + F
Sbjct: 231 LYACNVKPMRKMEKEELTAQPPNASEFPYR-ELLEEIAAKETLSRMNGNGQRPEGSQYRF 289
Query: 235 DMNAPDDDQGK-RKRGTDKPESKKRNIEPE-ECWFCLSSPKVESHLVICVGTLCYLALAK 292
+M +D G RKR D RN +P CWFCLS+ E HLV+ +G CY A+ K
Sbjct: 290 EMGGAEDGAGNGRKRHNDGGNDGPRNKQPVGPCWFCLSNVDAEKHLVVAIGNKCYAAMPK 349
Query: 293 GPLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTSHM 352
GPLT HV++L + H QS AP +V EI KFK +V FERN+RT H+
Sbjct: 350 GPLTEDHVMVLSVGHIQSQVSAPVEVRDEIEKFKSAFTLMANKQGKALVTFERNFRTQHL 409
Query: 353 QIQCVPVPRASELQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQI 412
Q+Q V + ++S + F A A ++ + P + + G PYF AELP G ++
Sbjct: 410 QVQMVMIDKSSSKALKSSFTTAAACAGFELVTMGPDESLLDMVNEGCPYFVAELPDGSKL 469
Query: 413 YAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVE 472
+ ++ + FPL FGR+VL+S PIL+CEDK DW+ C L KE+E + V ++ FKPFDFT E
Sbjct: 470 FTRSMKGFPLHFGREVLASTPILDCEDKVDWKACVLAKEKEVELVNKLKSDFKPFDFTAE 529
Query: 473 DDSD 476
DDSD
Sbjct: 530 DDSD 533
>U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical
protein B0361.2a protein.
Length = 460
Score = 78.2 bits (184), Expect = 1e-14
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%)
Query: 240 DDDQGKRKRGTDKPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK-GPLTPY 298
D+ KRK E K+ ++C C+ S +++ H +I VG YLA+ + L
Sbjct: 214 DEKDKKRKEKESIKEHKRIERSFDDCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDE 273
Query: 299 HVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTS---HMQIQ 355
H++I+P QH ST + ++V E+ ++ L + + N +FFE + H+ I+
Sbjct: 274 HLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHVDSNPHVFIE 333
Query: 356 CVPVPRASELQILEVFQ---DEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAE--LPSGE 410
CVPV + F+ +E + + L ++R+ G YF + L +G
Sbjct: 334 CVPVEQEIGDMASIYFKKAINECEGEYMDNKKLIETKDLRRQIPKGFSYFAVDFGLSNGF 393
Query: 411 QIYAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVA-NFRAKFKPFDF 469
++ HFP F ++++ +L+ K WR+ + + ++K A NF+ ++P D+
Sbjct: 394 AHVIESHDHFPSTFATEIIAG--MLDLPPK-KWRKRETDEMSKQKSRAENFKKLWEPVDW 450
Query: 470 TVEDDSDS 477
T +DS
Sbjct: 451 TKRLKNDS 458
>Z92782-5|CAB07190.1| 385|Caenorhabditis elegans Hypothetical
protein F14F8.6 protein.
Length = 385
Score = 28.7 bits (61), Expect = 9.5
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 327 DTLKKFYATMNMGVVFFERNYRTSHMQIQCVPVPRASELQILEVF 371
D ++ + + +F+ R Y + H++++C P P E+ I+ VF
Sbjct: 84 DFVRMMSTIVTLSPIFY-REYLSLHVRLKCQPPPSYLEMYIIYVF 127
>Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical
protein F40D4.12 protein.
Length = 733
Score = 28.7 bits (61), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 435 LNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSD 476
L E+K R C+L +E E KH FR + + + E +SD
Sbjct: 475 LELEEKI--RHCELCQETENKHRNEFRKLLQKYRWNFECESD 514
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 28.7 bits (61), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 134 PRYHFVPSKDKFFERQPYRNQS 155
PRYH P +D+F +R P R S
Sbjct: 131 PRYHSGPREDRFSDRNPPREHS 152
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,289
Number of Sequences: 27539
Number of extensions: 623704
Number of successful extensions: 1283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 5
length of query: 478
length of database: 12,573,161
effective HSP length: 84
effective length of query: 394
effective length of database: 10,259,885
effective search space: 4042394690
effective search space used: 4042394690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -