BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2 (478 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 355 3e-98 U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical p... 78 1e-14 Z92782-5|CAB07190.1| 385|Caenorhabditis elegans Hypothetical pr... 29 9.5 Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical pr... 29 9.5 AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 29 9.5 >AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical protein F17A9.2 protein. Length = 533 Score = 355 bits (874), Expect = 3e-98 Identities = 187/484 (38%), Positives = 273/484 (56%), Gaps = 17/484 (3%) Query: 2 GTRKVPVTTYVFGPSNPDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRR 61 G + P+ TY+ GP+NP + + Y EE E N+ Y+G++GL NT++ ++IAYL+G+ Sbjct: 58 GNIEFPIPTYILGPANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYLSGVE-- 115 Query: 62 ELGKDVPMCTYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRL 121 G + ++ +D + Q F G D+L+T++WP+ I + Q Sbjct: 116 --GSSKDLSCFDKADVEELLIP-LGTQVGFSGTDILLTSVWPADIARHSHNQPSKPQPG- 171 Query: 122 SDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNLKEKW 181 S LLS LA H+KPRYHF +ERQPYRN + + TRFI LA +GN K+KW Sbjct: 172 SVLLSKLAAHLKPRYHFA-GLGVHYERQPYRNHRVLLEPARHTTRFIGLAAIGNPEKQKW 230 Query: 182 IYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVV-KFTGNGQ------FFF 234 +YAC+++P+ KM +L + + PY E+L++ + + + GNGQ + F Sbjct: 231 LYACNVKPMRKMEKEELTAQPPNASEFPYR-ELLEEIAAKETLSRMNGNGQRPEGSQYRF 289 Query: 235 DMNAPDDDQGK-RKRGTDKPESKKRNIEPE-ECWFCLSSPKVESHLVICVGTLCYLALAK 292 +M +D G RKR D RN +P CWFCLS+ E HLV+ +G CY A+ K Sbjct: 290 EMGGAEDGAGNGRKRHNDGGNDGPRNKQPVGPCWFCLSNVDAEKHLVVAIGNKCYAAMPK 349 Query: 293 GPLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTSHM 352 GPLT HV++L + H QS AP +V EI KFK +V FERN+RT H+ Sbjct: 350 GPLTEDHVMVLSVGHIQSQVSAPVEVRDEIEKFKSAFTLMANKQGKALVTFERNFRTQHL 409 Query: 353 QIQCVPVPRASELQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQI 412 Q+Q V + ++S + F A A ++ + P + + G PYF AELP G ++ Sbjct: 410 QVQMVMIDKSSSKALKSSFTTAAACAGFELVTMGPDESLLDMVNEGCPYFVAELPDGSKL 469 Query: 413 YAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVE 472 + ++ + FPL FGR+VL+S PIL+CEDK DW+ C L KE+E + V ++ FKPFDFT E Sbjct: 470 FTRSMKGFPLHFGREVLASTPILDCEDKVDWKACVLAKEKEVELVNKLKSDFKPFDFTAE 529 Query: 473 DDSD 476 DDSD Sbjct: 530 DDSD 533 >U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical protein B0361.2a protein. Length = 460 Score = 78.2 bits (184), Expect = 1e-14 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 240 DDDQGKRKRGTDKPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK-GPLTPY 298 D+ KRK E K+ ++C C+ S +++ H +I VG YLA+ + L Sbjct: 214 DEKDKKRKEKESIKEHKRIERSFDDCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDE 273 Query: 299 HVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTS---HMQIQ 355 H++I+P QH ST + ++V E+ ++ L + + N +FFE + H+ I+ Sbjct: 274 HLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHVDSNPHVFIE 333 Query: 356 CVPVPRASELQILEVFQ---DEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAE--LPSGE 410 CVPV + F+ +E + + L ++R+ G YF + L +G Sbjct: 334 CVPVEQEIGDMASIYFKKAINECEGEYMDNKKLIETKDLRRQIPKGFSYFAVDFGLSNGF 393 Query: 411 QIYAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVA-NFRAKFKPFDF 469 ++ HFP F ++++ +L+ K WR+ + + ++K A NF+ ++P D+ Sbjct: 394 AHVIESHDHFPSTFATEIIAG--MLDLPPK-KWRKRETDEMSKQKSRAENFKKLWEPVDW 450 Query: 470 TVEDDSDS 477 T +DS Sbjct: 451 TKRLKNDS 458 >Z92782-5|CAB07190.1| 385|Caenorhabditis elegans Hypothetical protein F14F8.6 protein. Length = 385 Score = 28.7 bits (61), Expect = 9.5 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 327 DTLKKFYATMNMGVVFFERNYRTSHMQIQCVPVPRASELQILEVF 371 D ++ + + +F+ R Y + H++++C P P E+ I+ VF Sbjct: 84 DFVRMMSTIVTLSPIFY-REYLSLHVRLKCQPPPSYLEMYIIYVF 127 >Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical protein F40D4.12 protein. Length = 733 Score = 28.7 bits (61), Expect = 9.5 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 435 LNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSD 476 L E+K R C+L +E E KH FR + + + E +SD Sbjct: 475 LELEEKI--RHCELCQETENKHRNEFRKLLQKYRWNFECESD 514 >AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical protein F54A3.6 protein. Length = 470 Score = 28.7 bits (61), Expect = 9.5 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 134 PRYHFVPSKDKFFERQPYRNQS 155 PRYH P +D+F +R P R S Sbjct: 131 PRYHSGPREDRFSDRNPPREHS 152 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.320 0.136 0.424 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,443,289 Number of Sequences: 27539 Number of extensions: 623704 Number of successful extensions: 1283 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1275 Number of HSP's gapped (non-prelim): 5 length of query: 478 length of database: 12,573,161 effective HSP length: 84 effective length of query: 394 effective length of database: 10,259,885 effective search space: 4042394690 effective search space used: 4042394690 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
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