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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to
CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ...   142   6e-34
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ...   142   6e-34
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    88   1e-17
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    39   0.008
At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transfera...    36   0.045
At2g36790.1 68415.m04512 UDP-glucoronosyl/UDP-glucosyl transfera...    35   0.10 
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera...    35   0.14 
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera...    33   0.42 
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    33   0.55 
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    32   0.96 
At3g11840.1 68416.m01451 U-box domain-containing protein low sim...    30   2.9  

>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
           (CCCH-type) family protein contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF04677: Protein similar to CwfJ C-terminus 1,
           PF04676: Protein similar to CwfJ C-terminus 2
          Length = 593

 Score =  142 bits (343), Expect = 6e-34
 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 14/227 (6%)

Query: 252 KPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGPLTPYHVLILPIQHHQST 311
           KP S+  N   +ECWFCLSSP VESHL++ VG   Y AL KG L   H+LI+PI+H  +T
Sbjct: 368 KPRSENAN-RSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNT 426

Query: 312 TRAPDDVIKEITKFKDTLKKFYATMNMGVVFFER-NYRTSHMQIQCVPVPRASELQILEV 370
                +V  E++++++ L+  Y +     VFFE  + R SH  +Q VPVP +    +  +
Sbjct: 427 LVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNI 486

Query: 371 FQDEAGIASIQMEVLPPYSE-------IRQVTLPGAPYFHAELPSGEQIYAKTKQH--FP 421
           F   A     ++ V   +++       +++        F+ ELP G  +    +++  FP
Sbjct: 487 FSLAAEKLGFKL-VTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFP 545

Query: 422 LQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFD 468
            QFGR+VL+   +L   D+ADWR C++++EEE K   +F+ +F+ FD
Sbjct: 546 AQFGREVLAG--LLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFD 590



 Score = 70.1 bits (164), Expect = 3e-12
 Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 27/192 (14%)

Query: 27  EGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGL--SRRELGKDVPMCTYEPSDCSAVRDAC 84
           +G E+  N+ ++   G F+    + +AYL+G   S  + GK      Y   D  A+R   
Sbjct: 95  DGLEVCHNLFWLRGSGKFSLH-GLSVAYLSGRQSSESQFGK------YSQDDVDALRALA 147

Query: 85  FRGQSEFRGVDVLITTLWPSGIQQDECQT---VDVEQDRLSD-LLSWLAIHIKPRYHFVP 140
                E  G    IT  WP+G+      +   V +     SD  +S L + +KPRYH   
Sbjct: 148 ----EEPGGC---ITNEWPAGVTNRAAVSDIPVGISDSSCSDSTVSELVMEVKPRYHIAG 200

Query: 141 SKDKFFERQPYRN-QSMHQDYRECATRFIALAPVGNNLKEKWIYACSLQPISKMRMTDLL 199
           S   F+ R+PY N +S H       TRFI LA VGN  K+K+++A S  P S M   +L 
Sbjct: 201 SMGVFYAREPYLNAESTH------VTRFIGLAQVGNKNKQKFLHALSPTPTSTMSPAELS 254

Query: 200 QATTDETPCPYD 211
                 T  PY+
Sbjct: 255 AKPPKTTLWPYN 266


>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
           (CCCH-type) family protein contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF04677: Protein similar to CwfJ C-terminus 1,
           PF04676: Protein similar to CwfJ C-terminus 2
          Length = 404

 Score =  142 bits (343), Expect = 6e-34
 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 14/227 (6%)

Query: 252 KPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGPLTPYHVLILPIQHHQST 311
           KP S+  N   +ECWFCLSSP VESHL++ VG   Y AL KG L   H+LI+PI+H  +T
Sbjct: 179 KPRSENAN-RSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNT 237

Query: 312 TRAPDDVIKEITKFKDTLKKFYATMNMGVVFFER-NYRTSHMQIQCVPVPRASELQILEV 370
                +V  E++++++ L+  Y +     VFFE  + R SH  +Q VPVP +    +  +
Sbjct: 238 LVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNI 297

Query: 371 FQDEAGIASIQMEVLPPYSE-------IRQVTLPGAPYFHAELPSGEQIYAKTKQH--FP 421
           F   A     ++ V   +++       +++        F+ ELP G  +    +++  FP
Sbjct: 298 FSLAAEKLGFKL-VTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFP 356

Query: 422 LQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFD 468
            QFGR+VL+   +L   D+ADWR C++++EEE K   +F+ +F+ FD
Sbjct: 357 AQFGREVLAG--LLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFD 401



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 130 IHIKPRYHFVPSKDKFFERQPYRN-QSMHQDYRECATRFIALAPVGNNLKEKWIYACSLQ 188
           + +KPRYH   S   F+ R+PY N +S H       TRFI LA VGN  K+K+++A S  
Sbjct: 1   MEVKPRYHIAGSMGVFYAREPYLNAESTH------VTRFIGLAQVGNKNKQKFLHALSPT 54

Query: 189 PISKMRMTDLLQATTDETPCPYD 211
           P S M   +L       T  PY+
Sbjct: 55  PTSTMSPAELSAKPPKTTLWPYN 77


>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 88.2 bits (209), Expect = 1e-17
 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 19/256 (7%)

Query: 237 NAPDDDQGKRKRGTDKPESKKR----NIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           +AP     KR+  ++ PE   R      + E C FC  +PK   HLV+ +    YL L +
Sbjct: 438 DAPSKKSRKRESSSNIPEKDNRVKRIMTQQERCLFCFENPKRPKHLVVSIANFTYLMLPQ 497

Query: 293 G-PLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFER----NY 347
             PL   H  ILP+QH  ++    D+V  EI  FK  L   YA      VF E     + 
Sbjct: 498 HQPLVQGHCCILPMQHEAASRSVDDNVWDEIRNFKKCLIMMYAKEGKDAVFLETVIGLSQ 557

Query: 348 RTSHMQIQCVPVPR--ASE-----LQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAP 400
           +  H  I+C+P+P+  A E      + ++  + E    + +  +      +R       P
Sbjct: 558 QRRHCLIECIPIPQEIAKEGPLYFKKAIDEAESEWSQHNAKKLIDTSVKGLRNSIPKNFP 617

Query: 401 YFHAE--LPSGEQIYAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVA 458
           YFH E  L  G       +Q F    G +V+     L  ED    R+ Q + E ++K VA
Sbjct: 618 YFHVEFGLDKGFVHVIDDEQQFNSNLGLNVIRGMLELPEEDMYR-RRRQESVESQKKAVA 676

Query: 459 NFRAKFKPFDFTVEDD 474
            F  +++ FD+T + D
Sbjct: 677 TFAREWEHFDWTKQLD 692


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           K G DK E   K  I+ +EC   L S  VES L +C+G++C L LA+
Sbjct: 259 KVGEDKAERGNKAAIDQDECIKWLDSKDVESVLYVCLGSICNLPLAQ 305


>At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 36.3 bits (80), Expect = 0.045
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           K G DK E   K +I+ +EC   L S K  S L +C+G++C L L++
Sbjct: 258 KVGADKAERGNKSDIDQDECLKWLDSKKHGSVLYVCLGSICNLPLSQ 304


>At2g36790.1 68415.m04512 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 35.1 bits (77), Expect = 0.10
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           K G DK E   K +I+ +EC   L S +  S L +C+G++C L L++
Sbjct: 258 KVGVDKAERGNKSDIDQDECLEWLDSKEPGSVLYVCLGSICNLPLSQ 304


>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           K G DK E   K  I+ +EC   L S +  S L +C+G++C L L++
Sbjct: 259 KAGADKAERGSKAAIDQDECLQWLDSKEEGSVLYVCLGSICNLPLSQ 305


>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 491

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           K G D+ E   K +I+ +EC   L S +  S L +C+G++C L L++
Sbjct: 254 KLGEDQAERGNKADIDQDECIKWLDSKEEGSVLYVCLGSICNLPLSQ 300


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           K G DK E   +  I+ +EC   L S +  S L +C+G++C L L++
Sbjct: 259 KAGADKAERGNQAAIDQDECLQWLDSKEDGSVLYVCLGSICNLPLSQ 305


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 249 GTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292
           G DK +   K +I  ++C   L S +  S L +C+G+LC L LA+
Sbjct: 255 GLDKAKRGDKASIGQDQCLQWLDSQETGSVLYVCLGSLCNLPLAQ 299


>At3g11840.1 68416.m01451 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 470

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 87  GQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRLSDLLSWL 128
           G+   +G+D  +  L   GI  ++ +T+ +E DR+ + L+W+
Sbjct: 174 GRRRIKGLDESLRLLHLIGIPSNDAKTILMENDRVMESLTWV 215


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,273
Number of Sequences: 28952
Number of extensions: 578820
Number of successful extensions: 1170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 17
length of query: 478
length of database: 12,070,560
effective HSP length: 84
effective length of query: 394
effective length of database: 9,638,592
effective search space: 3797605248
effective search space used: 3797605248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)

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