BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001897-TA|BGIBMGA001897-PA|IPR006768|Protein similar to CwfJ, C-terminal 1, IPR006767|Protein similar to CwfJ, C-terminal 2 (478 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 142 6e-34 At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 142 6e-34 At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ... 88 1e-17 At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 39 0.008 At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transfera... 36 0.045 At2g36790.1 68415.m04512 UDP-glucoronosyl/UDP-glucosyl transfera... 35 0.10 At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera... 35 0.14 At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera... 33 0.42 At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera... 33 0.55 At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera... 32 0.96 At3g11840.1 68416.m01451 U-box domain-containing protein low sim... 30 2.9 >At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04677: Protein similar to CwfJ C-terminus 1, PF04676: Protein similar to CwfJ C-terminus 2 Length = 593 Score = 142 bits (343), Expect = 6e-34 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 14/227 (6%) Query: 252 KPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGPLTPYHVLILPIQHHQST 311 KP S+ N +ECWFCLSSP VESHL++ VG Y AL KG L H+LI+PI+H +T Sbjct: 368 KPRSENAN-RSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNT 426 Query: 312 TRAPDDVIKEITKFKDTLKKFYATMNMGVVFFER-NYRTSHMQIQCVPVPRASELQILEV 370 +V E++++++ L+ Y + VFFE + R SH +Q VPVP + + + Sbjct: 427 LVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNI 486 Query: 371 FQDEAGIASIQMEVLPPYSE-------IRQVTLPGAPYFHAELPSGEQIYAKTKQH--FP 421 F A ++ V +++ +++ F+ ELP G + +++ FP Sbjct: 487 FSLAAEKLGFKL-VTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFP 545 Query: 422 LQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFD 468 QFGR+VL+ +L D+ADWR C++++EEE K +F+ +F+ FD Sbjct: 546 AQFGREVLAG--LLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFD 590 Score = 70.1 bits (164), Expect = 3e-12 Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 27/192 (14%) Query: 27 EGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGL--SRRELGKDVPMCTYEPSDCSAVRDAC 84 +G E+ N+ ++ G F+ + +AYL+G S + GK Y D A+R Sbjct: 95 DGLEVCHNLFWLRGSGKFSLH-GLSVAYLSGRQSSESQFGK------YSQDDVDALRALA 147 Query: 85 FRGQSEFRGVDVLITTLWPSGIQQDECQT---VDVEQDRLSD-LLSWLAIHIKPRYHFVP 140 E G IT WP+G+ + V + SD +S L + +KPRYH Sbjct: 148 ----EEPGGC---ITNEWPAGVTNRAAVSDIPVGISDSSCSDSTVSELVMEVKPRYHIAG 200 Query: 141 SKDKFFERQPYRN-QSMHQDYRECATRFIALAPVGNNLKEKWIYACSLQPISKMRMTDLL 199 S F+ R+PY N +S H TRFI LA VGN K+K+++A S P S M +L Sbjct: 201 SMGVFYAREPYLNAESTH------VTRFIGLAQVGNKNKQKFLHALSPTPTSTMSPAELS 254 Query: 200 QATTDETPCPYD 211 T PY+ Sbjct: 255 AKPPKTTLWPYN 266 >At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04677: Protein similar to CwfJ C-terminus 1, PF04676: Protein similar to CwfJ C-terminus 2 Length = 404 Score = 142 bits (343), Expect = 6e-34 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 14/227 (6%) Query: 252 KPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGPLTPYHVLILPIQHHQST 311 KP S+ N +ECWFCLSSP VESHL++ VG Y AL KG L H+LI+PI+H +T Sbjct: 179 KPRSENAN-RSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNT 237 Query: 312 TRAPDDVIKEITKFKDTLKKFYATMNMGVVFFER-NYRTSHMQIQCVPVPRASELQILEV 370 +V E++++++ L+ Y + VFFE + R SH +Q VPVP + + + Sbjct: 238 LVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNI 297 Query: 371 FQDEAGIASIQMEVLPPYSE-------IRQVTLPGAPYFHAELPSGEQIYAKTKQH--FP 421 F A ++ V +++ +++ F+ ELP G + +++ FP Sbjct: 298 FSLAAEKLGFKL-VTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFP 356 Query: 422 LQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFD 468 QFGR+VL+ +L D+ADWR C++++EEE K +F+ +F+ FD Sbjct: 357 AQFGREVLAG--LLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFD 401 Score = 57.2 bits (132), Expect = 2e-08 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 130 IHIKPRYHFVPSKDKFFERQPYRN-QSMHQDYRECATRFIALAPVGNNLKEKWIYACSLQ 188 + +KPRYH S F+ R+PY N +S H TRFI LA VGN K+K+++A S Sbjct: 1 MEVKPRYHIAGSMGVFYAREPYLNAESTH------VTRFIGLAQVGNKNKQKFLHALSPT 54 Query: 189 PISKMRMTDLLQATTDETPCPYD 211 P S M +L T PY+ Sbjct: 55 PTSTMSPAELSAKPPKTTLWPYN 77 >At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam profiles PF04677: Protein similar to CwfJ N terminus 1, PF04676: Protein similar to CwfJ N terminus 2 Length = 692 Score = 88.2 bits (209), Expect = 1e-17 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 19/256 (7%) Query: 237 NAPDDDQGKRKRGTDKPESKKR----NIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 +AP KR+ ++ PE R + E C FC +PK HLV+ + YL L + Sbjct: 438 DAPSKKSRKRESSSNIPEKDNRVKRIMTQQERCLFCFENPKRPKHLVVSIANFTYLMLPQ 497 Query: 293 G-PLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFER----NY 347 PL H ILP+QH ++ D+V EI FK L YA VF E + Sbjct: 498 HQPLVQGHCCILPMQHEAASRSVDDNVWDEIRNFKKCLIMMYAKEGKDAVFLETVIGLSQ 557 Query: 348 RTSHMQIQCVPVPR--ASE-----LQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAP 400 + H I+C+P+P+ A E + ++ + E + + + +R P Sbjct: 558 QRRHCLIECIPIPQEIAKEGPLYFKKAIDEAESEWSQHNAKKLIDTSVKGLRNSIPKNFP 617 Query: 401 YFHAE--LPSGEQIYAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVA 458 YFH E L G +Q F G +V+ L ED R+ Q + E ++K VA Sbjct: 618 YFHVEFGLDKGFVHVIDDEQQFNSNLGLNVIRGMLELPEEDMYR-RRRQESVESQKKAVA 676 Query: 459 NFRAKFKPFDFTVEDD 474 F +++ FD+T + D Sbjct: 677 TFAREWEHFDWTKQLD 692 >At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 496 Score = 38.7 bits (86), Expect = 0.008 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 K G DK E K I+ +EC L S VES L +C+G++C L LA+ Sbjct: 259 KVGEDKAERGNKAAIDQDECIKWLDSKDVESVLYVCLGSICNLPLAQ 305 >At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 495 Score = 36.3 bits (80), Expect = 0.045 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 K G DK E K +I+ +EC L S K S L +C+G++C L L++ Sbjct: 258 KVGADKAERGNKSDIDQDECLKWLDSKKHGSVLYVCLGSICNLPLSQ 304 >At2g36790.1 68415.m04512 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 495 Score = 35.1 bits (77), Expect = 0.10 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 K G DK E K +I+ +EC L S + S L +C+G++C L L++ Sbjct: 258 KVGVDKAERGNKSDIDQDECLEWLDSKEPGSVLYVCLGSICNLPLSQ 304 >At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 496 Score = 34.7 bits (76), Expect = 0.14 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 K G DK E K I+ +EC L S + S L +C+G++C L L++ Sbjct: 259 KAGADKAERGSKAAIDQDECLQWLDSKEEGSVLYVCLGSICNLPLSQ 305 >At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 491 Score = 33.1 bits (72), Expect = 0.42 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 K G D+ E K +I+ +EC L S + S L +C+G++C L L++ Sbjct: 254 KLGEDQAERGNKADIDQDECIKWLDSKEEGSVLYVCLGSICNLPLSQ 300 >At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 496 Score = 32.7 bits (71), Expect = 0.55 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 247 KRGTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 K G DK E + I+ +EC L S + S L +C+G++C L L++ Sbjct: 259 KAGADKAERGNQAAIDQDECLQWLDSKEDGSVLYVCLGSICNLPLSQ 305 >At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 490 Score = 31.9 bits (69), Expect = 0.96 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 249 GTDKPE-SKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAK 292 G DK + K +I ++C L S + S L +C+G+LC L LA+ Sbjct: 255 GLDKAKRGDKASIGQDQCLQWLDSQETGSVLYVCLGSLCNLPLAQ 299 >At3g11840.1 68416.m01451 U-box domain-containing protein low similarity to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain Length = 470 Score = 30.3 bits (65), Expect = 2.9 Identities = 12/42 (28%), Positives = 25/42 (59%) Query: 87 GQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRLSDLLSWL 128 G+ +G+D + L GI ++ +T+ +E DR+ + L+W+ Sbjct: 174 GRRRIKGLDESLRLLHLIGIPSNDAKTILMENDRVMESLTWV 215 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.320 0.136 0.424 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,657,273 Number of Sequences: 28952 Number of extensions: 578820 Number of successful extensions: 1170 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1146 Number of HSP's gapped (non-prelim): 17 length of query: 478 length of database: 12,070,560 effective HSP length: 84 effective length of query: 394 effective length of database: 9,638,592 effective search space: 3797605248 effective search space used: 3797605248 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
- SilkBase 1999-2023 -