GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001896-TA|BGIBMGA001896-PA|IPR003014|N/apple PAN,
IPR001507|Endoglin/CD105 antigen, IPR003609|Apple-like
         (1386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    37   0.017
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    36   0.052
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    33   0.21 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    32   0.64 
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   1.1  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    28   7.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 37/146 (25%), Positives = 51/146 (34%), Gaps = 9/146 (6%)

Query: 529 ERYPADRYPPGIDRYPPSVDRYPPGIDRYPSVIDRFPPGGDRYPPGIDRYPPGADRYPAG 588
           E  P    PP     PPS    PP   + P +    PP     P    + PP A   P+ 
Sbjct: 136 ELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ--PAAPVKSPPSAPSLPSA 193

Query: 589 IDRYPSNVDRYPGSLDRYPSRYPASNGERFPLDGGRYPTYDPVPNDLGRYP-AADRYPIS 647
           +   P  V   P  L + P    +S    F    G  P    V ++  ++P      P +
Sbjct: 194 VPPMPPKVP--PPPLSQAPVANTSSRPSSFAPPAGHAPN---VTSESPKFPNRGPSIPSA 248

Query: 648 RYPIDVYPDRYPTNRYPERFPVRGRY 673
             P  V P  Y   + P R    GR+
Sbjct: 249 SVP-PVPPSSYVLQQRPNRVDDHGRF 273


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 1236 EDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVETPSHVRKMIEVFDNRNELLEENGS 1295
            E  N+  D  ++      KV+ E    D  L+DE   P    K I+V DN N LL+EN S
Sbjct: 1132 ETKNEATDMEESLTTPSGKVNKEVIVDDTSLRDEAIVPD---KAIDVADNSNALLKENIS 1188

Query: 1296 SDSS 1299
            S S+
Sbjct: 1189 SQSN 1192


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 568 GDRYPPGI-----DRYPPGADRYPAGIDRYPSNVDRYPGSLDRYPSRY------PASNGE 616
           G  YP G+     D Y P  D   +GI++Y +   ++    D Y S Y      P+    
Sbjct: 64  GYDYPTGVTESYGDEYTP-VDTASSGINQYSTEKGKFTRPSDEYESEYSDYNAQPSDANN 122

Query: 617 RFPLDG-GRYPTYDPVPNDLGRYPAADRYPISRY 649
            + L G GRY  YDP  + L     +  Y  S Y
Sbjct: 123 FYNLRGDGRYNAYDPSSDSLANVYNSVPYGSSPY 156


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 34/146 (23%), Positives = 44/146 (30%), Gaps = 7/146 (4%)

Query: 536  YPPGIDRYPPSVDRYPPGIDRYPSVIDRFPPGGDRYPPGIDRYPPGADRYPAGIDRYPSN 595
            Y P    Y P+   Y P    Y +    + P    Y P    Y P +  Y      Y   
Sbjct: 1585 YSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1644

Query: 596  VDRYPGSLDRYPSRYPASNGERFPLDGGRYPTYDPVPNDLGRYPAADRY-PISRYPIDVY 654
               Y  +   Y    P S     P      P+Y P        P +  Y P S       
Sbjct: 1645 SPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTS 1701

Query: 655  PDRYPTNRYPERFPVRGRY-PSRPGW 679
            P   PT+  P   P    Y P+ P +
Sbjct: 1702 PSYSPTS--PSYSPTSPSYSPTSPSY 1725



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/95 (23%), Positives = 27/95 (28%), Gaps = 1/95 (1%)

Query: 536  YPPGIDRYPPSVDRYPPGIDRYPSVIDRFPPGGDRYPPGIDRYPPGADRYPAGIDRYPSN 595
            Y P    Y P+   Y P    Y      + P    Y P    Y P +  Y      Y   
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1714

Query: 596  VDRYPGSLDRYPSRYPASNGERFPLDGGRYPTYDP 630
               Y  +   Y    P S     P      P+Y P
Sbjct: 1715 SPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSP 1748



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 33/146 (22%), Positives = 42/146 (28%), Gaps = 7/146 (4%)

Query: 536  YPPGIDRYPPSVDRYPPGIDRYPSVIDRFPPGGDRYPPGIDRYPPGADRYPAGIDRYPSN 595
            Y P    Y P+   Y P    Y      + P    Y      Y P +  Y      Y   
Sbjct: 1571 YMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPT 1630

Query: 596  VDRYPGSLDRYPSRYPASNGERFPLDGGRYPTYDPVPNDLGRYPAADRY-PISRYPIDVY 654
               Y  +   Y    P S     P      P+Y P        P +  Y P S       
Sbjct: 1631 SPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTS 1687

Query: 655  PDRYPTNRYPERFPVRGRY-PSRPGW 679
            P   PT+  P   P    Y P+ P +
Sbjct: 1688 PSYSPTS--PSYSPTSPSYSPTSPSY 1711


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 282

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 1267 KDEVETPSHVRKMIEVFDNRNELLEEN 1293
            K  VET SH R  IE+FD ++EL + +
Sbjct: 123  KQRVETQSHRRSKIEIFDAQDELFDRS 149


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 298

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 1215 RRRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVETPS 1274
            ++ ++    S + N + +PK+E+A K V+   +      K    E   D   KD     +
Sbjct: 6    QKEEIKDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEA 65

Query: 1275 HVRKMIEVF 1283
             V K +E +
Sbjct: 66   EVLKQVEFY 74


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,281,859
Number of Sequences: 5004
Number of extensions: 283092
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 11
length of query: 1386
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1304
effective length of database: 1,952,150
effective search space: 2545603600
effective search space used: 2545603600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)