GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001896-TA|BGIBMGA001896-PA|IPR003014|N/apple PAN,
IPR001507|Endoglin/CD105 antigen, IPR003609|Apple-like
         (1386 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    25   5.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   5.7  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 559 SVIDRFPPGGDRYPPGIDRYPPGADRYPAGIDRYPSNVDRYPGSLDRYPSRYPASNGE 616
           +++D    G +    G+  Y P A+ Y    D +   ++ Y G   +     P   G+
Sbjct: 32  TLLDCIQSGIENLDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKDFGD 89



 Score = 23.8 bits (49), Expect = 9.9
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 539 GIDRYPPSVDRYPPGIDRYPSVIDRFPPGGDRYPPGI---DRYPP 580
           GI+     V  Y P  + Y    D F P  + Y  G    D++PP
Sbjct: 40  GIENLDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPP 84


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 559 SVIDRFPPGGDRYPPGIDRYPPGADRYPAGIDRYPSNVDRYPGSLDRYPSRYPASNGE 616
           +++D    G +    G+  Y P A+ Y    D +   ++ Y G   +     P   G+
Sbjct: 48  TLLDCIQSGIENLDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKDFGD 105



 Score = 23.8 bits (49), Expect = 9.9
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 539 GIDRYPPSVDRYPPGIDRYPSVIDRFPPGGDRYPPGI---DRYPP 580
           GI+     V  Y P  + Y    D F P  + Y  G    D++PP
Sbjct: 56  GIENLDSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPP 100


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,622
Number of Sequences: 429
Number of extensions: 20572
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 4
length of query: 1386
length of database: 140,377
effective HSP length: 66
effective length of query: 1320
effective length of database: 112,063
effective search space: 147923160
effective search space used: 147923160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)