Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001895-TA|BGIBMGA001895-PA|undefined
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31880.1 68417.m04531 expressed protein 35 0.19
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 34 0.25
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 32 1.0
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 32 1.3
At2g05642.1 68415.m00603 expressed protein 31 1.8
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p... 31 3.1
At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PS... 31 3.1
At3g28770.1 68416.m03591 expressed protein 30 4.1
At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kina... 30 4.1
At3g45830.1 68416.m04960 expressed protein 30 5.4
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 29 7.2
At2g18470.1 68415.m02151 protein kinase family protein contains ... 29 7.2
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 29 7.2
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 29 9.5
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 9.5
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 29 9.5
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 9.5
At1g44760.1 68414.m05128 universal stress protein (USP) family p... 29 9.5
At1g34220.2 68414.m04247 expressed protein contains Pfam profil... 29 9.5
At1g34220.1 68414.m04246 expressed protein contains Pfam profil... 29 9.5
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 34.7 bits (76), Expect = 0.19
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 169 EMDTGDESIPDAEIEAASNMPEENEPVMMSPSPENVSAPRANSVNLPSASSHNDLEAYSH 228
E + S+ A++ S++ EE EP + S + +++P +S + SS N+
Sbjct: 361 EKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSPPVDSSVTAATSSENEKNKSVQ 420
Query: 229 DIPS-TSNDNT 238
+PS TS D T
Sbjct: 421 ILPSKTSGDET 431
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 34.3 bits (75), Expect = 0.25
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 205 SAPRANSVNLPSASSHNDLEAYSHDIPSTSNDNTGQGDVVESTSLYGPYIMQSNARGEEL 264
SAP S++LPS S +D Y S+S DV E +Y IM S+++ ++
Sbjct: 210 SAPPLPSLHLPSESQFHDSVGYQLGDHSSSFSGLMNVDVDEFGDVYDIPIMSSSSQ-VQV 268
Query: 265 LVRRTMSLWPTSGLAC 280
L+ +L+ +SGL C
Sbjct: 269 LIFSFSALYLSSGLLC 284
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 43 PNVPSTSGINRVNEPDSNCRESRKRPSSLKLNRPNFDADDSSSDTGNDDYSLGSED 98
P + + R++ +S K + L + + D+ S +TGN D+++GS+D
Sbjct: 625 PGLRRSKRATRIDYQQYEFSDSDKEATGLAKRKRFVEPDEPSDETGNGDFTMGSQD 680
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 172 TGDESIPDAEIEAASNMPEENEPVMMSPSPENVSAPRANSVNLPSASS 219
T +++ ++ A ++P+ + P+ +NV PR +SV LPS+SS
Sbjct: 393 TSKQNVTKQDVRRAHSLPQRDPRASRFPAKQNV--PRDDSVRLPSSSS 438
>At2g05642.1 68415.m00603 expressed protein
Length = 394
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 334 NSTGEKTKPDSDSHI-PTKENDTTEQATTSSNVCA 367
NST +T+PDSD +I T N TT Q T S+ A
Sbjct: 303 NSTTSETEPDSDMNIVSTPSNATTNQIDTESSEAA 337
>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
protein similar to fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|13377776|gb|AAK20857
Length = 278
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 164 PGPSCEMDTGDESIPDAEIEAASNMPEENEPVMMSPSPENVSAPRANSVNLPSASS 219
PGP+ + ++ D ++P A++ PE + P +PS +N A+ PS+S+
Sbjct: 203 PGPAADDNSPDSAVPKTPPAPATDTPEADSPA-PAPSADNEKIEAADKAK-PSSSA 256
>At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PSP)
family protein similar to SP|Q13435 Splicing factor 3B
subunit 2 (Spliceosome associated protein 145) (SAP 145)
(SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa
subunit) {Homo sapiens}; contains Pfam profiles PF04046:
PSP, PF04037: Domain of unknown function (DUF382)
Length = 584
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 295 LNSDEEEYPDGILYEYHKGHSRRVDPNNLSSVYHLKIAKNSTGEKT 340
L D+ + PD LY+ + V P L H + K T EKT
Sbjct: 457 LRKDQRKEPDRALYQVLEEKGESVAPGTLLGTSHTYVIKTGTQEKT 502
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 299 EEEYPDGILYEYHKGHSRRVDPNNLSSVYHLKIAKNSTGEKTKPDSDSHIPTKENDTTE 357
EE+ D E + ++ D N H+K+ K + +K K +++ TKE ++++
Sbjct: 1114 EEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSK 1172
>At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam profile
PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
Length = 427
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 182 IEAASNMPEENEPVMMSPSPENVSAPRANSVNLPSASS 219
++ ASN P+ + M S +P S NSVN+ S +S
Sbjct: 259 MKTASNSPDRSSSTMYSCTPSRNSVDSENSVNIQSVAS 296
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 29.9 bits (64), Expect = 5.4
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 140 QQGQREQGSRASSPDMDFLEMDFDPGPSCEMDTGDESIPDAEIEAASNMPEENEPVMMSP 199
+Q + E GS + + L D D G + ++ E AE + N + NEP + P
Sbjct: 1214 EQTETEMGSEPKTGEPTGL--DGDQGATDQLCNETEQA--AEEQDGENTAQGNEPTIWEP 1269
Query: 200 SPENVSAPRANSVNLPSASSHND 222
P VS P ++ + +S ND
Sbjct: 1270 DPAVVSNPVEDNTFICQENSVND 1292
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 29.5 bits (63), Expect = 7.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 334 NSTGEKTKPDSDSHI-PTKENDTTEQATTSSNVCA 367
N T +T+PDSD +I T N TT Q T S+ A
Sbjct: 1830 NPTTSETEPDSDMNIVSTPSNATTNQIDTESSEAA 1864
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 29.5 bits (63), Expect = 7.2
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 197 MSPSPENVSAPRANSVNLPSASSHNDLEAYSHDIPSTSNDNTGQGD 242
M+ SPE SAP NS + PS S+ + S PS + QGD
Sbjct: 1 MASSPE--SAPPTNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGD 44
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 29.5 bits (63), Expect = 7.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 319 DPNNLSSVYHLKIAKNSTGEKTKPDSDSHIPTKENDTTEQATTSSNVCAELPRCM 373
D N + + ++ E P +D+H P + Q+ TS+N +LPR +
Sbjct: 396 DENEMETSTQVEEHNPCLSEIQGPSNDTHRPASDYTMLNQSHTSTNTLPQLPRTL 450
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 48 TSGINRVNEPDSNCRESRKRPSSLKLNRPNFDADDSSSDTGND 90
TSG NRV+E S + P S KL P+ D S+ G D
Sbjct: 841 TSGQNRVSEETEKGSGSNQDPDSSKLQSPHI-LDRGRSENGGD 882
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 145 EQGSRASSPDMDFLEMDFDPGPSCEMDTGDESIPDAEIEAASNMPEENEPVMMSPSPENV 204
E S+ S P +E F P P +TGDE+ + P + +M++ + E
Sbjct: 139 ESQSQPSPPLESIVETWFRPSPPTSTETGDETQLPIPPPQEAKTPPSSPSMMLNATEEFE 198
Query: 205 SAPR 208
S P+
Sbjct: 199 SQPK 202
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 29.1 bits (62), Expect = 9.5
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 147 GSRASSPDMDFLEMDFDPGPSCEMDTGDESIPDAEIEAASNMPEENEPVMMSPSPENVS- 205
G++ SP + +P + D+ + +S+ PEE+ P+ S SPE S
Sbjct: 22 GAQEESPSPAAVSPGREPSTDSPLSPSSSPEEDSPLSPSSS-PEEDSPLPPSSSPEEDSP 80
Query: 206 -APRAN-SVNLPSASSHNDLEAYSHDIPSTSNDNTGQGDVVESTSLYGPYIMQSNARGEE 263
AP ++ V+ P A S + E S PS+S + S P S+ + E
Sbjct: 81 LAPSSSPEVDSPLAPSSSP-EVDSPQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPES 139
Query: 264 L 264
L
Sbjct: 140 L 140
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 9.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 148 SRASSPDMDFLEMDFDPGPSCEMDTGDESIPDAEIEAASNMPEENEPVMMSPSPENVSAP 207
+R D D +E + + P +D E++ ++ AAS +P E++ P V AP
Sbjct: 85 ARVLDDDSD-MECELEASPGVSVDVVTEAVAHVKVMAASYVPSESD----IPEDSTVEAP 139
Query: 208 RANSVNLP 215
++N+P
Sbjct: 140 L--TINIP 145
>At1g44760.1 68414.m05128 universal stress protein (USP) family
protein contains Pfam profile PF00582: universal stress
protein family
Length = 213
Score = 29.1 bits (62), Expect = 9.5
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 227 SHDIPSTSNDNTGQGDVVESTSLYGPYIM-QSNARGEELLV---RRTMSLWPTSGLACHH 282
S D + ND+T G LYG Y + AR + ++V + S H
Sbjct: 27 SGDSSTAFNDDTSGGGYSSMEGLYGVYSGGDTAARSKRVMVVVDESSRSKHAMMWALTHL 86
Query: 283 ATTGDLVCLSEMLNSDEEEYP 303
GDLV L +++ D+E P
Sbjct: 87 TNKGDLVTLLHVVSPDDEATP 107
>At1g34220.2 68414.m04247 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 619
Score = 29.1 bits (62), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 207 PRANSVNLPSASSHNDLEAYSHDIPSTSNDNTG 239
P A SVN P A+ E SHD+P S +N G
Sbjct: 257 PGATSVNAPDAAKSASYEHTSHDLPFDS-ENAG 288
>At1g34220.1 68414.m04246 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 649
Score = 29.1 bits (62), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 207 PRANSVNLPSASSHNDLEAYSHDIPSTSNDNTG 239
P A SVN P A+ E SHD+P S +N G
Sbjct: 287 PGATSVNAPDAAKSASYEHTSHDLPFDS-ENAG 318
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.130 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,034
Number of Sequences: 28952
Number of extensions: 725933
Number of successful extensions: 1715
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1695
Number of HSP's gapped (non-prelim): 30
length of query: 641
length of database: 12,070,560
effective HSP length: 86
effective length of query: 555
effective length of database: 9,580,688
effective search space: 5317281840
effective search space used: 5317281840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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