GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001895-TA|BGIBMGA001895-PA|undefined
         (641 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     31   0.018
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    31   0.018
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           31   0.018
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.92 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   4.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   6.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   6.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   8.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   8.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   8.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   8.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   8.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 31.5 bits (68), Expect = 0.018
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 34  ICQDLAANSPNV-PSTSGINRVNEPDSNCRESRKRPSSLKLNRPNFDADDSSSDTGND 90
           I Q+LA  +PNV P+    + V  P S  ++SR  PS   L       +D++SD  +D
Sbjct: 128 ILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSGQHLQELGLRLEDANSDEQDD 185


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 0.018
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 34  ICQDLAANSPNV-PSTSGINRVNEPDSNCRESRKRPSSLKLNRPNFDADDSSSDTGND 90
           I Q+LA  +PNV P+    + V  P S  ++SR  PS   L       +D++SD  +D
Sbjct: 128 ILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSGQHLQELGLRLEDANSDEQDD 185


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 0.018
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 34  ICQDLAANSPNV-PSTSGINRVNEPDSNCRESRKRPSSLKLNRPNFDADDSSSDTGND 90
           I Q+LA  +PNV P+    + V  P S  ++SR  PS   L       +D++SD  +D
Sbjct: 128 ILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSGQHLQELGLRLEDANSDEQDD 185


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.8 bits (54), Expect = 0.92
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 24  QDVLSCQKHKICQDLAANSPNVPSTSGINRVNEPDSNCRESRKRPSSLKLNR 75
           ++V  CQKH +C D    + NVP     NR  +        ++ P+ L  +R
Sbjct: 145 ENVDGCQKHPLCND--DPNGNVPLGKSCNRYWQCQGGYPRLQRCPAMLVFDR 194


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 174 DESIPDAEIEAASNMPEENEPVMMSPSPENVSAPRANSVNLPSASSHNDLEAYSHDIPST 233
           DE   + E  ++ N+ EE   ++     E  S    +S    S + H+ +      +P T
Sbjct: 23  DEGDGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRADHSPVFGKVEPVPHT 82

Query: 234 SNDNTG 239
           S+ N G
Sbjct: 83  SSFNMG 88


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 332 AKNSTGEKTKPDSDSHIPTKENDTTEQATTSS 363
           A  S   +T P     +P K   TT++ TT S
Sbjct: 421 ADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVS 452


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 76  PNFDADDSSSDTGNDDYSLGSEDGCIYTYR 105
           P  DA +  S + NDD + G+  GC + +R
Sbjct: 355 PQDDAGNLISPSINDDGTCGNGYGCEHRWR 384


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 164 PGPSCEMDTGDESIPD 179
           PGPS E+  GDE I D
Sbjct: 106 PGPSVEVCLGDEVIID 121


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 186 SNMPEENEPVMMSPSPENVSAP 207
           S+  EE  P   S  P+N SAP
Sbjct: 41  SDNDEEERPSFKSRKPKNYSAP 62


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 203 NVSAPRANSVNLPSASSHN 221
           ++S+ R N+ N PSA+++N
Sbjct: 120 DISSTRGNNNNTPSATNNN 138


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 182 IEAASNMPEENEPVMMSPSPENVSAPRANSVNLPSASSHNDLEAYSH 228
           +E +S +  ++ P++   SP  VS    N+ +  S++S   + A  H
Sbjct: 137 VEKSSKLKNKSAPILTKTSPTPVSI--NNNTSTSSSASSPSVTAAPH 181


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 203 NVSAPRANSVNLPSASSHN 221
           ++S+ R N+ N PSA+++N
Sbjct: 68  DISSTRGNNNNTPSATNNN 86


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 203 NVSAPRANSVNLPSASSHN 221
           ++S+ R N+ N PSA+++N
Sbjct: 251 DISSTRGNNNNTPSATNNN 269


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,620
Number of Sequences: 317
Number of extensions: 6925
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 14
length of query: 641
length of database: 114,650
effective HSP length: 61
effective length of query: 580
effective length of database: 95,313
effective search space: 55281540
effective search space used: 55281540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)