GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001895-TA|BGIBMGA001895-PA|undefined
         (641 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   4.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   7.7  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 207 PRANSVNLPSASSHNDLEAYSHDIPSTSN 235
           P +   N P+ + +  L+ Y+HDIP T N
Sbjct: 238 PLSGETNDPNKTEYT-LKIYTHDIPETYN 265


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 207 PRANSVNLPSASSHNDLEAYSHDIPSTSN 235
           P +   N P+ + +  L+ Y+HDIP T N
Sbjct: 238 PLSGETNDPNKTEYT-LKIYTHDIPETYN 265


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 463 FPTY-PERAVSLSHWLADWISLGAIP 487
           F TY P   + +  W+A WI   AIP
Sbjct: 218 FHTYIPSALIVVMSWIAFWIKPEAIP 243


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 191 ENEPVMMSPSPENVSAPRANSVNLPSASSHNDLEAYSHDIPS 232
           +NE  ++S   ++ +AP    V++   +  N  +     IP+
Sbjct: 64  DNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPT 105


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,397
Number of Sequences: 429
Number of extensions: 8885
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 641
length of database: 140,377
effective HSP length: 62
effective length of query: 579
effective length of database: 113,779
effective search space: 65878041
effective search space used: 65878041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)