GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001894-TA|BGIBMGA001894-PA|undefined
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    30   0.36 
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    30   0.47 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   1.1  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.4  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    27   2.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.4  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    27   4.4  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   4.4  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    26   5.8  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 258 EINLTKAEIKCNGGVKMKTPEIVNCVFTVLNEI 290
           E+   K  IKC G V +K P ++N   ++  EI
Sbjct: 368 ELEFVKQTIKCLGDVALKVPSVINDCISIFLEI 400


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 19/104 (18%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 59  SKILQALVSSLQMSNTAKYTVVLEELPLLKYSEEDSSGILITVRSSQEDSNTKKVAYVAI 118
           S ++  L++ +    T +   +  ++ +  +  E  + I   ++++ ED +T++V     
Sbjct: 164 SGVINDLLAQISRRLTPQPIKIRADVEVTCFGYEGINAIKAALKAA-EDVHTEEVPIKVK 222

Query: 119 LLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIK 162
           L++  + + + NA+     L++ E+ +G + K+I  +   C +K
Sbjct: 223 LVAPPLYVLLTNALDKSLGLKKLEEAIGAIEKSITASNGTCTVK 266


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 189  QFTLVYRSPQTEVKSKLSLSFDIGDVRLIWNGIKDETTKKADLIILAYQILQNQI-FSLG 247
            +F  VY+      + KLSL   + ++R + NG+   T K  D +I  +  L N++  S+ 
Sbjct: 1475 EFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLY-PTIKVDDFLIDCFMSLYNEVKSSIS 1533

Query: 248  YLDVTV 253
             LD  +
Sbjct: 1534 PLDANI 1539


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 89  YSEEDSSGILITVRSSQEDSNTKKVAYVAILLSWGISISME------NAIHLPYMLERGE 142
           Y E D S +L  +  S +D+N   V   A+LL+  I+ ++         I LP + +R +
Sbjct: 349 YQEGDYSELLRVIAKSLKDANVVVVGVAALLLT-HIAKALRKGFLPYTGIVLPSLFDRFK 407

Query: 143 QRVGTVVKTILQTA 156
           +R  ++V ++L  A
Sbjct: 408 ERKSSLVHSLLDAA 421


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 189 QFTLVYRS-PQTEVKSKLSLSFDIGDVRLIWNGIKDETTKKADLIILAYQILQNQIFSLG 247
           + TL   S PQ +V S ++  FDI  +R I + +  +T    +  IL+    Q   F   
Sbjct: 67  RITLTIESMPQNKVLSNVTKEFDILAIRPIGDRLLQQTCSDLEFDILSIDFTQRLPF--- 123

Query: 248 YLDVTVFDLSEINLTKAEIKCNGGVK 273
           YL  T   L+       EI  + G++
Sbjct: 124 YLKHTFMGLAVSRDIGIEISYSSGLR 149


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 13/76 (17%)

Query: 29  LIYNEGLWKINK----VSPLYNLQYNGIKLKQYGSK----ILQALVS---SLQMS--NTA 75
           L+YNEG+ K+NK     +PL  L+     L ++       +L+ L      + MS  +T 
Sbjct: 595 LVYNEGIVKLNKDFDDFTPLNLLKCVNYSLMEFQKNSTFDMLEKLYEIGREIDMSKFSTL 654

Query: 76  KYTVVLEELPLLKYSE 91
           KY + L  + LLK SE
Sbjct: 655 KYNLQLPNVDLLKESE 670


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 34  GLWKINKVSPLYNLQYNGIK 53
           GLWK + +S L+NL Y+G++
Sbjct: 171 GLWKGHTISFLHNLLYSGLQ 190


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 90  SEEDSSGILITVRSSQEDSNTKKVAYVAILLSWGISISMENAIHLPYMLERGEQRVGTVV 149
           S+EDS   L+   SS E+    +   +A L +  + +S ENA HL Y+++  +     ++
Sbjct: 184 SDEDSEISLMEGLSSIENGYPDEKETLAALDN--VKLSDENAAHLGYLVKYFQNYTDKII 241

Query: 150 KTILQTAFDCNIKQFSFTQ-HQLLNFGFSFIDSDTSRSNDQF 190
             + +T  D   K+ S  +  +   +  +  D+D   SN  F
Sbjct: 242 --LKETLMDWEDKEPSLQELTESTKYLENLADTDHRTSNKPF 281


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 89  YSEEDSSGILITVRSSQEDSNTKKVAYV---AILLSWGISISMENAIHL 134
           YS EDS    ++   S +D N + + Y     I  S+ I+ S+ + +HL
Sbjct: 114 YSNEDSGAASLSDEESVDDENLRGLHYKPNGLIKQSFSITTSLNHKLHL 162


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,063
Number of Sequences: 5004
Number of extensions: 53771
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 10
length of query: 302
length of database: 2,362,478
effective HSP length: 72
effective length of query: 230
effective length of database: 2,002,190
effective search space: 460503700
effective search space used: 460503700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)