GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001894-TA|BGIBMGA001894-PA|undefined
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0176 + 2533133-2533189,2533569-2533648,2533897-2534002           33   0.37 
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299...    29   3.5  
05_03_0160 - 9044194-9044432,9045361-9045562,9046307-9046411,904...    29   6.1  
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473...    28   8.0  
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933...    28   8.0  

>09_01_0176 + 2533133-2533189,2533569-2533648,2533897-2534002
          Length = 80

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 46 NLQYNGIKLKQYGSKILQALVSSLQMSNTAKYTVVLEELPLLKYSEEDS 94
          ++ YN +K K    +I+ ALVS L M+N     +V++E  +++ S   S
Sbjct: 10 SIAYNSLKYKLPSERIVTALVSMLSMTNIGILYIVVKEKKVVELSRRHS 58


>01_06_1597 +
           38528241-38528588,38529623-38529721,38529814-38529927,
           38530349-38530420,38530520-38530630,38530738-38530857,
           38531541-38531613,38531997-38532077,38532167-38532231,
           38532383-38532484,38532571-38532744,38532873-38532938
          Length = 474

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 118 ILLSWGISISM--ENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIKQFSFTQHQLLNFG 175
           +L S G+S S     AI + ++L+ G  RVG ++       FD ++KQ  F+   LL  G
Sbjct: 164 LLSSVGVSQSKVTPGAIAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSSDLLLEIG 223


>05_03_0160 -
           9044194-9044432,9045361-9045562,9046307-9046411,
           9046523-9046897,9046956-9047208,9047349-9047563
          Length = 462

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 213 DVRLIWNGIKDETTKKADLIILAYQILQNQIFSLGYLDVTVFDLSEINLTKAEIKCNGG 271
           D R +   + D   KK D +++    ++       +L VT  D++E+NL +  IK  GG
Sbjct: 132 DTRALVRRLTDGKHKKQDAVMVVAMAIKEASDKKIWLSVTQ-DVNEVNLLRTAIKSVGG 189


>11_01_0595 +
           4732330-4732723,4732839-4732903,4733023-4733143,
           4733596-4733687,4733850-4733915,4734106-4734125,
           4734147-4734239,4734358-4734445,4734570-4734635,
           4734728-4734843,4735410-4735500,4736133-4736234,
           4736342-4736425,4736551-4736643,4736728-4736823,
           4736914-4736999,4737528-4737606,4737675-4737788,
           4737890-4737985,4738060-4738123,4738221-4738510,
           4738901-4738956,4739060-4739177,4739287-4739367,
           4739683-4739762,4740001-4740055,4740142-4740211,
           4740279-4740468,4740567-4740690,4741055-4741129,
           4741217-4741390
          Length = 1112

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 151 TILQTAFDCNIKQFSFTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSP--QTEVKSKLSLS 208
           T    ++   I  FS   H L   GF ++  + SR+ +Q  + + +P     V    S+ 
Sbjct: 241 TYTNNSYFYGIIWFSKITHNLQELGFDYLRDNLSRNKEQLVMRWPTPFHFAIVDEVDSVL 300

Query: 209 FDIGDVRLIWNGIKDETTKKADLIILAYQILQNQIFSLGYLDVTVFDLSEINLTKAEI 266
            D G   L+ +G  +    +  +   A  +L         L     DL+E  +T AE+
Sbjct: 301 IDEGRNPLLISGEDNRDAARYPVAAKAADLLMEGFHYTVELKSNNIDLTEDGVTCAEM 358


>01_05_0208 -
           19291953-19292552,19293027-19293134,19293231-19293344,
           19293464-19293573,19293720-19293808,19293942-19294138,
           19294241-19294402,19294501-19294619,19294739-19294826,
           19294911-19295016,19295157-19295245,19295351-19295503,
           19295631-19295723,19295823-19295889,19296217-19296329,
           19296453-19296548,19297963-19298139
          Length = 826

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 48  QYNGIKLKQYGS-KILQALVSSLQMSNT-AKY--TVVLEELPLLKYSEEDSSGILITVRS 103
           +Y  ++  +YG  K L +++ S++ +    +Y  T   + + + KY+ + SS   I  R 
Sbjct: 326 EYGNLRQPKYGHLKELHSVLKSMEKTLVHGEYFDTNYGDNITVTKYTLDSSSACFINNRF 385

Query: 104 SQEDSNTKKVAYVAILLSWGISI 126
             +D N        +L +W +SI
Sbjct: 386 DDKDVNVTLDGATHLLPAWSVSI 408


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,834,643
Number of Sequences: 37544
Number of extensions: 287390
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 14,793,348
effective HSP length: 82
effective length of query: 220
effective length of database: 11,714,740
effective search space: 2577242800
effective search space used: 2577242800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)