BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001894-TA|BGIBMGA001894-PA|undefined (302 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) 40 0.003 SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22 SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46) 31 1.5 >SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) Length = 379 Score = 39.5 bits (88), Expect = 0.003 Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%) Query: 36 WKINKVSPLYNLQYNGIKLKQYGSKILQAL-------VSSLQMSNTAKYTVVLEELPLLK 88 W+++ SP + L Y LKQYG + +L V ++ + K L L Sbjct: 97 WRVHCCSPFHKLCYKN--LKQYGKLLSSSLQAETTKEVKFVEEHFSGKLVARFSVLKDLV 154 Query: 89 YSEEDSSGILITVRSSQEDSNT-KKVAYVAILL-SWGISISMENA--------IHLPYML 138 D G+ I + + +S K++A I+L S G I + + LP L Sbjct: 155 LYNTDPRGLQIELVDNTSNSKIEKRLALSTIVLCSIGRDIDENMSDDAFKTHFVSLPVCL 214 Query: 139 ERGEQRVGTVVKTILQTAFDCNIKQFSFTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSPQ 198 +G + V + L+ FDC I F+ +L + + + S L Y+ P Sbjct: 215 AKGTVALTRYVLSWLERQFDCRITPMVFSPSELSWYSSLWAGTVPKESEHLLELCYKVP- 273 Query: 199 TEVKS--KLSLSFDIGDVRLIW 218 T ++ +++LS + D R +W Sbjct: 274 TGIRGLRQINLSVNASDARELW 295 >SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 508 Score = 33.5 bits (73), Expect = 0.22 Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 119 LLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIKQFSF 166 ++ WG S MENA + E VG ++KT+ A DC+++ SF Sbjct: 243 VIIWGASSDMENAEFCTELYNYIEGFVGPLIKTLSDFAQDCSMQYCSF 290 >SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46) Length = 576 Score = 30.7 bits (66), Expect = 1.5 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Query: 16 GNTSRHVTGDPIALIYNEGLWKINKVSPLYNLQYNGIKLKQYGSKILQALVSSL---QMS 72 G + H GD + I N G+ I K++ Y + K++ Y +L SS+ MS Sbjct: 265 GGIAIHCKGDALTKITN-GVDTI-KINDSYTTRITSQKVRDYKDMTPVSLRSSITPSSMS 322 Query: 73 NTAKYTVVLEELPLLKYSEEDS 94 + YT L+E+ L + E+S Sbjct: 323 SRLTYTPTLKEITLQRQESEES 344 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,244,110 Number of Sequences: 59808 Number of extensions: 345419 Number of successful extensions: 764 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 761 Number of HSP's gapped (non-prelim): 4 length of query: 302 length of database: 16,821,457 effective HSP length: 82 effective length of query: 220 effective length of database: 11,917,201 effective search space: 2621784220 effective search space used: 2621784220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 60 (28.3 bits)
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