GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001894-TA|BGIBMGA001894-PA|undefined
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)                      40   0.003
SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46)                  31   1.5  

>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
          Length = 379

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%)

Query: 36  WKINKVSPLYNLQYNGIKLKQYGSKILQAL-------VSSLQMSNTAKYTVVLEELPLLK 88
           W+++  SP + L Y    LKQYG  +  +L       V  ++   + K       L  L 
Sbjct: 97  WRVHCCSPFHKLCYKN--LKQYGKLLSSSLQAETTKEVKFVEEHFSGKLVARFSVLKDLV 154

Query: 89  YSEEDSSGILITVRSSQEDSNT-KKVAYVAILL-SWGISISMENA--------IHLPYML 138
               D  G+ I +  +  +S   K++A   I+L S G  I    +        + LP  L
Sbjct: 155 LYNTDPRGLQIELVDNTSNSKIEKRLALSTIVLCSIGRDIDENMSDDAFKTHFVSLPVCL 214

Query: 139 ERGEQRVGTVVKTILQTAFDCNIKQFSFTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSPQ 198
            +G   +   V + L+  FDC I    F+  +L  +   +  +    S     L Y+ P 
Sbjct: 215 AKGTVALTRYVLSWLERQFDCRITPMVFSPSELSWYSSLWAGTVPKESEHLLELCYKVP- 273

Query: 199 TEVKS--KLSLSFDIGDVRLIW 218
           T ++   +++LS +  D R +W
Sbjct: 274 TGIRGLRQINLSVNASDARELW 295


>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 119 LLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIKQFSF 166
           ++ WG S  MENA     +    E  VG ++KT+   A DC+++  SF
Sbjct: 243 VIIWGASSDMENAEFCTELYNYIEGFVGPLIKTLSDFAQDCSMQYCSF 290


>SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46)
          Length = 576

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 16  GNTSRHVTGDPIALIYNEGLWKINKVSPLYNLQYNGIKLKQYGSKILQALVSSL---QMS 72
           G  + H  GD +  I N G+  I K++  Y  +    K++ Y      +L SS+    MS
Sbjct: 265 GGIAIHCKGDALTKITN-GVDTI-KINDSYTTRITSQKVRDYKDMTPVSLRSSITPSSMS 322

Query: 73  NTAKYTVVLEELPLLKYSEEDS 94
           +   YT  L+E+ L +   E+S
Sbjct: 323 SRLTYTPTLKEITLQRQESEES 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,244,110
Number of Sequences: 59808
Number of extensions: 345419
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 4
length of query: 302
length of database: 16,821,457
effective HSP length: 82
effective length of query: 220
effective length of database: 11,917,201
effective search space: 2621784220
effective search space used: 2621784220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)