GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001894-TA|BGIBMGA001894-PA|undefined
         (302 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF315785-1|AAK01366.1|  437|Drosophila melanogaster pol polyprot...    33   0.37 
EF428975-1|ABO20847.1| 2381|Drosophila melanogaster Kon-tiki pro...    31   2.0  
AY051797-1|AAK93221.1|  514|Drosophila melanogaster LD31354p pro...    31   2.0  
AE014134-2938|AAF53672.2| 2355|Drosophila melanogaster CG10275-P...    31   2.0  
AE014297-111|ABI31133.1|  403|Drosophila melanogaster CG41467-PB...    29   7.9  

>AF315785-1|AAK01366.1|  437|Drosophila melanogaster pol polyprotein
           protein.
          Length = 437

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 108 SNTKKVAYVAILLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIKQFSFT 167
           S T +V YV+ +L+   S S ++  H         Q + T+ +T+ Q    C + +  F 
Sbjct: 185 SRTYRVRYVSFILTTSSSFSKDDETHY--------QNLDTIFRTLQQANMKCQLDKCEFM 236

Query: 168 QHQLLNFGFSFIDS--DTSRSNDQFTLVYRSPQT--EVKSKLSLS 208
           + ++   GF   D   +TS +  Q    +  P+T  E++S L LS
Sbjct: 237 KRKVEFLGFVVSDKGIETSPTKVQAISDFPIPRTLKELRSFLGLS 281


>EF428975-1|ABO20847.1| 2381|Drosophila melanogaster Kon-tiki protein.
          Length = 2381

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 166  FTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSPQTEVKSKLSLSFDIGDV 214
            FTQ QL     S++ +D +RSND F +    P T   +++ +  ++  V
Sbjct: 2009 FTQQQLETSQISYMQTDLNRSNDSFQVSAYVPGTNYVAQVDVVMEVEPV 2057


>AY051797-1|AAK93221.1|  514|Drosophila melanogaster LD31354p
           protein.
          Length = 514

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 166 FTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSPQTEVKSKLSLSFDIGDV 214
           FTQ QL     S++ +D +RSND F +    P T   +++ +  ++  V
Sbjct: 449 FTQQQLETSQISYMQTDLNRSNDSFQVSAYVPGTNYVAQVDVVMEVEPV 497


>AE014134-2938|AAF53672.2| 2355|Drosophila melanogaster CG10275-PA
            protein.
          Length = 2355

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 166  FTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSPQTEVKSKLSLSFDIGDV 214
            FTQ QL     S++ +D +RSND F +    P T   +++ +  ++  V
Sbjct: 1983 FTQQQLETSQISYMQTDLNRSNDSFQVSAYVPGTNYVAQVDVVMEVEPV 2031


>AE014297-111|ABI31133.1|  403|Drosophila melanogaster CG41467-PB,
           isoform B protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 78  TVVLEELPLLKYSEE---DSSGILITVRSSQEDSNTKKVAYVAILLSWGISISMENAIHL 134
           TVVL   P +K S         I + V+S     N  +V       +WG+ +++   +H+
Sbjct: 58  TVVLWPCPRMKISSNFLPSFEAISLAVQSISTKLNWSQVDIYIGDDNWGLGLAIAANLHV 117

Query: 135 PYMLERG 141
           PY +E G
Sbjct: 118 PYRIEIG 124


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,892
Number of Sequences: 52641
Number of extensions: 505429
Number of successful extensions: 1266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 7
length of query: 302
length of database: 24,830,863
effective HSP length: 85
effective length of query: 217
effective length of database: 20,356,378
effective search space: 4417334026
effective search space used: 4417334026
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)