GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001894-TA|BGIBMGA001894-PA|undefined
         (302 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-4|CAB03950.1|  345|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF039713-10|AAB96721.1|  691|Caenorhabditis elegans Hypothetical...    28   7.1  
Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase ...    28   9.4  

>Z81481-4|CAB03950.1|  345|Caenorhabditis elegans Hypothetical
           protein C38D9.4 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 248 YLDVTVFDLSEINLTKAEIKCNGGVKMKTPEIVNCVFTVLNEICCDLWQD 297
           ++D   F+ S ++L  A    N  +K+KTP+    +    NEI C  W D
Sbjct: 39  FVDTKYFEFSNMDLCIAIDGDNCYLKIKTPDENRTLGYKKNEIGCSFWAD 88


>AF039713-10|AAB96721.1|  691|Caenorhabditis elegans Hypothetical
           protein F57B10.4 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 186 SNDQFTLVYRSPQTEVKSKLSLSFDIGDVRLIWNGIKDETTKKADLIILAYQILQNQIFS 245
           S ++ + V  S  +E   K  L  +I + R I+     E   K D+I     ++  Q+ S
Sbjct: 192 SLEKLSSVKDSSTSENVYKAKLEEEINEARQIY-----EDALKQDVISQESAMMTQQLES 246

Query: 246 LGYLDVTVFDLSEINLTKAE 265
           L  L   + DL++INLT  E
Sbjct: 247 LNELCSDLSDLNKINLTSIE 266


>Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical
           protein F31C3.4 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 96  GILITVRSSQEDSNTKKVAYVAILLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQT 155
           G  + VR  Q +  T  +A    L S  + I     I +   +  GEQ    +V +ILQ 
Sbjct: 209 GFCLGVRLVQANLTTPWIALAQFLFSVQVLIGGLAGIGIMKFISGGEQSFAAIVSSILQ- 267

Query: 156 AFDCN----IKQFSFTQHQLLN 173
           A  C     I  F    H+L N
Sbjct: 268 AIACGTFLYITTFEVIPHELHN 289


>U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase
           protein 26 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 10  WEQEEDGNTSRHVTGDPIALIYNEGLWKINKVSPLYNLQYNGIKLKQYG-SKILQALVSS 68
           WE E D  T     G+      + G+ K  K      +    +KL + G +KI   L  +
Sbjct: 123 WELEHDQITIHKKLGEGAFGEVSSGVMKFKKGMKTVQVAIKQVKLDKTGKAKIKDFLAEA 182

Query: 69  LQM-----SNTAK-YTVVLEELPLLKYSEEDSSGILITVRSSQEDSNTKKVAYVAILLSW 122
             M      N  K Y V + + PL    E   +G L +     ED +  K   + +  +W
Sbjct: 183 RTMRKLGHQNIIKFYGVGVLQEPLYLVMELAVNGALDSFLKKNEDLSVDKKTEMILQAAW 242

Query: 123 GI 124
           G+
Sbjct: 243 GL 244


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,032,023
Number of Sequences: 27539
Number of extensions: 274275
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 4
length of query: 302
length of database: 12,573,161
effective HSP length: 81
effective length of query: 221
effective length of database: 10,342,502
effective search space: 2285692942
effective search space used: 2285692942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)