Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
         (127 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08390.1 68414.m00928 expressed protein                             41   3e-04
At4g10290.1 68417.m01692 hypothetical protein                          29   1.3  
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR...    28   1.7  
At2g02000.1 68415.m00135 glutamate decarboxylase, putative stron...    27   3.9  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    26   6.8  

>At1g08390.1 68414.m00928 expressed protein
          Length = 137

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 23  WLQGTIEQTVGR---DILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGT-AVKT 78
           WLQG +    G    + L++ D  G  ++    T D  +     K G Y  ++G   V+T
Sbjct: 38  WLQGVLVPFSGGGGDNCLVLDDGTGLLELGL--TNDFAL--RQWKSGMYVMVVGVYQVRT 93

Query: 79  KGVPEVQAYKFIDLSSQPEMKSSWEIEVNEA-NLFLE 114
             +P ++ +K +DLS  P+ ++ W +EV +A  LF E
Sbjct: 94  GQIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYE 130


>At4g10290.1 68417.m01692 hypothetical protein
          Length = 120

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 99  KSSWEIEVNEANLFLEGKLIPNIEDCHK 126
           K  W+ +  E   F+EGKL   +ED HK
Sbjct: 48  KFPWKFKKTETMYFVEGKLKVKVEDHHK 75


>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 9   FIKDLINKPTPIDVWLQGTIE-----QTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
           ++K LINK   I+++  G I      Q VGR  +   + + R  +     A+ + D    
Sbjct: 470 WLKFLINKSL-IEIYRTGQIVMHKLLQQVGRQAIRRQEPWKRQILIN---ANEICDLLRY 525

Query: 64  KKGTYCCIIGTAVKTKGVPEV 84
           +KGT C + G +  T G+ EV
Sbjct: 526 EKGTSCNVSGISFDTSGISEV 546


>At2g02000.1 68415.m00135 glutamate decarboxylase, putative strong
           similarity to glutamate decarboxylase [Nicotiana
           tabacum] GI:21327029
          Length = 500

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 58  IDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLE 114
           I KNSI K     II   +K  G P +    F+    +PE        +N+ N+ ++
Sbjct: 32  IPKNSIPKEAAYQIINDELKFDGNPRLNLASFVTTWMEPECDKLMMESINKNNVEMD 88


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 52  ETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANL 111
           E+   +++   + + T  C+  T VK   + ++  YKF  L+ +   KS W+ + N  N 
Sbjct: 350 ESKGYLVEDTIVLETTLLCVTETKVK---LCDMCKYKFFLLNPRQHAKSHWKKKKNMHNH 406

Query: 112 FLE 114
            L+
Sbjct: 407 LLQ 409


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,032
Number of Sequences: 28952
Number of extensions: 115920
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 12,070,560
effective HSP length: 73
effective length of query: 54
effective length of database: 9,957,064
effective search space: 537681456
effective search space used: 537681456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)