BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding, OB-fold (127 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8RX36 Cluster: Putative uncharacterized protein At1g08... 41 0.008 UniRef50_Q10F22 Cluster: OB-fold nucleic acid binding domain con... 40 0.011 UniRef50_UPI00004D98ED Cluster: C16orf75 protein.; n=2; Xenopus ... 38 0.078 UniRef50_Q96E14 Cluster: OB DNA-binding domain-containing protei... 36 0.18 UniRef50_A7PQL1 Cluster: Chromosome chr6 scaffold_25, whole geno... 35 0.41 UniRef50_UPI0000EB3463 Cluster: C16orf75 protein.; n=1; Canis lu... 35 0.55 UniRef50_A3J3E7 Cluster: Uroporphyrinogen-III synthase; n=1; Fla... 34 0.72 UniRef50_A7Q4L0 Cluster: Chromosome chr10 scaffold_50, whole gen... 34 0.72 UniRef50_UPI0000545A4A Cluster: PREDICTED: hypothetical protein;... 33 1.7 UniRef50_A0J7N6 Cluster: Transcriptional regulator, AraC family;... 33 1.7 UniRef50_A7SB65 Cluster: Predicted protein; n=1; Nematostella ve... 33 1.7 UniRef50_A7EV26 Cluster: Putative uncharacterized protein; n=1; ... 33 2.2 UniRef50_Q5B0S1 Cluster: Putative uncharacterized protein; n=1; ... 32 2.9 UniRef50_Q0CB21 Cluster: Predicted protein; n=1; Aspergillus ter... 32 2.9 UniRef50_Q8YM31 Cluster: All5110 protein; n=1; Nostoc sp. PCC 71... 31 5.1 UniRef50_Q18KQ3 Cluster: 5'-methylthioadenosine phosphorylase Mt... 31 5.1 UniRef50_Q1Q527 Cluster: Putative uncharacterized protein; n=1; ... 31 6.8 UniRef50_UPI0000D56DDC Cluster: PREDICTED: similar to CG5002-PA;... 31 8.9 UniRef50_UPI00006CBFC8 Cluster: Elongation factor Tu GTP binding... 31 8.9 UniRef50_UPI00005873EB Cluster: PREDICTED: similar to Chromosome... 31 8.9 UniRef50_Q4PD62 Cluster: Putative uncharacterized protein; n=1; ... 31 8.9 UniRef50_P08724 Cluster: Balbiani ring protein 1; n=10; Chironom... 31 8.9 >UniRef50_Q8RX36 Cluster: Putative uncharacterized protein At1g08390; n=2; Arabidopsis thaliana|Rep: Putative uncharacterized protein At1g08390 - Arabidopsis thaliana (Mouse-ear cress) Length = 137 Score = 40.7 bits (91), Expect = 0.008 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 9/97 (9%) Query: 23 WLQGTIEQTVGR---DILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGT-AVKT 78 WLQG + G + L++ D G ++ T D + K G Y ++G V+T Sbjct: 38 WLQGVLVPFSGGGGDNCLVLDDGTGLLELGL--TNDFAL--RQWKSGMYVMVVGVYQVRT 93 Query: 79 KGVPEVQAYKFIDLSSQPEMKSSWEIEVNEA-NLFLE 114 +P ++ +K +DLS P+ ++ W +EV +A LF E Sbjct: 94 GQIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYE 130 >UniRef50_Q10F22 Cluster: OB-fold nucleic acid binding domain containing protein, expressed; n=2; Oryza sativa|Rep: OB-fold nucleic acid binding domain containing protein, expressed - Oryza sativa subsp. japonica (Rice) Length = 175 Score = 40.3 bits (90), Expect = 0.011 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 14/101 (13%) Query: 22 VWLQGTIEQTVGRD---ILIISDTFGRAKITKC-ETADGVIDKNSIKKGTYCCIIGTAVK 77 VWLQG + RD +++ D A+IT + A+G ++G Y ++G+ Sbjct: 66 VWLQGVVVLADYRDGAGHILVDDGSCVAEITLTPKEAEG----QPWREGMYVMVLGSYSG 121 Query: 78 TKGVPE-----VQAYKFIDLSSQPEMKSSWEIEVNEA-NLF 112 + +P ++ +K +DLS+QP+ +S W +EV EA N F Sbjct: 122 KESLPRANRPVIKVHKLVDLSAQPDRESMWYMEVVEAFNFF 162 >UniRef50_UPI00004D98ED Cluster: C16orf75 protein.; n=2; Xenopus tropicalis|Rep: C16orf75 protein. - Xenopus tropicalis Length = 150 Score = 37.5 bits (83), Expect = 0.078 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Query: 22 VWLQGTIEQTVGRD---ILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKT 78 VW+QGT+ Q V D L ++DT T C K+ ++ G Y ++G + + Sbjct: 58 VWMQGTVIQ-VRPDRGTTLRLNDT--THTFTVCGADKVPKGKHCLEIGKYVMVMGVVLSS 114 Query: 79 KGVPEVQAYKFIDLSSQPEMKSSWEIEVN 107 P ++A K DLS P W+ EV+ Sbjct: 115 SPEPILRAVKITDLSDNPVHSRMWKHEVD 143 >UniRef50_Q96E14 Cluster: OB DNA-binding domain-containing protein C16orf175; n=15; Euteleostomi|Rep: OB DNA-binding domain-containing protein C16orf175 - Homo sapiens (Human) Length = 147 Score = 36.3 bits (80), Expect = 0.18 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 22 VWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGV 81 VW+QG + R + D G + E + + G Y ++G Sbjct: 58 VWMQGRVVMA-DRGEARLRDPSGDFSVRGLERVPR--GRPCLVPGKYVMVMGVVQACSPE 114 Query: 82 PEVQAYKFIDLSSQPEMKSSWEIEVNE 108 P +QA K DLS P +S WE+EV + Sbjct: 115 PCLQAVKMTDLSDNPIHESMWELEVED 141 >UniRef50_A7PQL1 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=4; core eudicotyledons|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 134 Score = 35.1 bits (77), Expect = 0.41 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 64 KKGTYCCIIGTAVKTKGVPE-VQAYKFIDLSSQPEMKSSWEIEVNEA 109 K G Y ++G G P ++ +K +DLS P+ +S W +EV EA Sbjct: 77 KIGMYVMVVGGYFVRSGEPPMIKVHKIVDLSPFPDRESMWYLEVIEA 123 >UniRef50_UPI0000EB3463 Cluster: C16orf75 protein.; n=1; Canis lupus familiaris|Rep: C16orf75 protein. - Canis familiaris Length = 86 Score = 34.7 bits (76), Expect = 0.55 Identities = 15/44 (34%), Positives = 23/44 (52%) Query: 65 KGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNE 108 +G Y ++G P +QA K DLS P ++ WE+EV + Sbjct: 37 RGKYVMVMGVVQVCSPEPCLQAVKMTDLSDNPVHENMWELEVED 80 >UniRef50_A3J3E7 Cluster: Uroporphyrinogen-III synthase; n=1; Flavobacteria bacterium BAL38|Rep: Uroporphyrinogen-III synthase - Flavobacteria bacterium BAL38 Length = 222 Score = 34.3 bits (75), Expect = 0.72 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 58 IDKNSIKKGTYCCIIGTAVKT-KGVPEVQAYKFIDLSSQPEMKS 100 ++ N+++ T CI T KT + +PEV YK I ++SQP +++ Sbjct: 169 LENNTLENKTCFCIGTTTAKTLENIPEVSGYKNIIIASQPTVEN 212 >UniRef50_A7Q4L0 Cluster: Chromosome chr10 scaffold_50, whole genome shotgun sequence; n=22; Vitis vinifera|Rep: Chromosome chr10 scaffold_50, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 1113 Score = 34.3 bits (75), Expect = 0.72 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 11 KDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKG 66 +D + PTPID WL GT E+ + +L ++ FG + + + G++ K + G Sbjct: 800 RDNMEIPTPIDSWLPGTHEKISHQQLLYATNDFGEDNLIG-KGSQGMVYKGVLSNG 854 >UniRef50_UPI0000545A4A Cluster: PREDICTED: hypothetical protein; n=1; Danio rerio|Rep: PREDICTED: hypothetical protein - Danio rerio Length = 148 Score = 33.1 bits (72), Expect = 1.7 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 22 VWLQGTI-EQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKG 80 VW+QGT+ E + L++ D G + + K + G Y ++G Sbjct: 56 VWMQGTVLELQADNNTLLMLDETGNFTVNGINSVPK--GKPCLSPGKYVMVMGVIQSHSP 113 Query: 81 VPEVQAYKFIDLSSQPEM-KSSWEIEVNE 108 P ++A K DLS+ + + +W EV + Sbjct: 114 EPVLRAVKMADLSANAAIHRRNWIYEVED 142 >UniRef50_A0J7N6 Cluster: Transcriptional regulator, AraC family; n=3; Gammaproteobacteria|Rep: Transcriptional regulator, AraC family - Shewanella woodyi ATCC 51908 Length = 271 Score = 33.1 bits (72), Expect = 1.7 Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 10 IKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKI 48 IK L NK TPI++ + T+ Q + ++I+ SDT R +I Sbjct: 104 IKTLANKETPIEMLFEKTVAQDLEQEIIQASDTKQRIEI 142 >UniRef50_A7SB65 Cluster: Predicted protein; n=1; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis Length = 150 Score = 33.1 bits (72), Expect = 1.7 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%) Query: 22 VWLQGTIEQTVG-RDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIG---TAVK 77 VWLQG I + + ++ D G A IT + ++ K+G Y I G T + Sbjct: 56 VWLQGYIVKLFDDNNDFLLDDGTGVAHITG---VNKLVKNVLFKEGMYVMIAGQLKTLLS 112 Query: 78 TKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANL 111 + G P V+ K DL+ + W +EV ++ L Sbjct: 113 SVGHPLVRVLKISDLTKSSLAEPHWILEVIDSQL 146 >UniRef50_A7EV26 Cluster: Putative uncharacterized protein; n=1; Sclerotinia sclerotiorum 1980|Rep: Putative uncharacterized protein - Sclerotinia sclerotiorum 1980 Length = 935 Score = 32.7 bits (71), Expect = 2.2 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 21 DVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKG 80 +VW + + + + R + I+ G A ITK + D + K+ ++G + Sbjct: 138 EVWRKSQLSRELERLLPILEPGSGSADITKRKRLDSDVQLG--KRPVL--VVGQSDSPIS 193 Query: 81 VPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPNIEDCH 125 VP+ ++ +S P+ KS ++I+ + G + N + H Sbjct: 194 VPDNESQTRTSISGWPDQKSDFQIQEEALSPMAAGSSMENFSNAH 238 >UniRef50_Q5B0S1 Cluster: Putative uncharacterized protein; n=1; Emericella nidulans|Rep: Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans) Length = 555 Score = 32.3 bits (70), Expect = 2.9 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 29 EQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVP 82 E+TV R++ +S + R+ +C +ADG++ ++SI +I A +G+P Sbjct: 220 ERTVSRNVKALSSRY-RSAALRCLSADGILSRHSINSLQSLILINYARLHRGLP 272 >UniRef50_Q0CB21 Cluster: Predicted protein; n=1; Aspergillus terreus NIH2624|Rep: Predicted protein - Aspergillus terreus (strain NIH 2624) Length = 516 Score = 32.3 bits (70), Expect = 2.9 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 19 PIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYC-----CIIG 73 P + W Q + Q L I + FG A I C+ DGV+D I C ++G Sbjct: 217 PAEQWGQFVMNQEETFPTLCIFEVFGNASIAACDELDGVMD-GIISDPDACTFDPYSLVG 275 Query: 74 TAVKTKGV 81 T V GV Sbjct: 276 TVVTCDGV 283 >UniRef50_Q8YM31 Cluster: All5110 protein; n=1; Nostoc sp. PCC 7120|Rep: All5110 protein - Anabaena sp. (strain PCC 7120) Length = 795 Score = 31.5 bits (68), Expect = 5.1 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 6/103 (5%) Query: 17 PTPIDVWLQGT-IEQTVGRDILIIS-DTFGRAKITKCETADGVIDKNSIKKGTYCCIIGT 74 P+ I V GT ++ G+ + +I D F ++ T+ G I+ ++ +GT Sbjct: 169 PSAIQVQASGTQLQVPTGKTLALIGGDIFVDSR--NLSTSQGRIEFGAVGEGTVSLTPNN 226 Query: 75 AVKTKGVPEVQAYKFIDLSSQPEMKS--SWEIEVNEANLFLEG 115 + G +VQ++ IDLS+Q + + + EI + AN+ L G Sbjct: 227 LGWSLGYQDVQSFGNIDLSNQTLLSTGGNGEIHLWGANVSLSG 269 >UniRef50_Q18KQ3 Cluster: 5'-methylthioadenosine phosphorylase MtaP; n=2; Halobacteriaceae|Rep: 5'-methylthioadenosine phosphorylase MtaP - Haloquadratum walsbyi (strain DSM 16790) Length = 301 Score = 31.5 bits (68), Expect = 5.1 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 45 RAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEV---QAYKFIDLSSQPEMKSS 101 R+ +T + D + +K GTY CI G T+ E Q + I +++ PE K + Sbjct: 140 RSIVTDVAMENTAADIDIVKDGTYVCIEGPQFSTRAESEFYRSQGWDIIGMTTIPEAKLA 199 Query: 102 WEIEV 106 E E+ Sbjct: 200 REAEL 204 >UniRef50_Q1Q527 Cluster: Putative uncharacterized protein; n=1; Candidatus Kuenenia stuttgartiensis|Rep: Putative uncharacterized protein - Candidatus Kuenenia stuttgartiensis Length = 566 Score = 31.1 bits (67), Expect = 6.8 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 73 GTAVKT-KGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPNIEDCHK 126 GT+++T KG+PE + + I ++ + K W+ +++ N L KL P+ D +K Sbjct: 65 GTSLETEKGLPETEKTEMIITDAEGKAKELWD-TIHKENYKLNWKLWPDTGDFYK 118 >UniRef50_UPI0000D56DDC Cluster: PREDICTED: similar to CG5002-PA; n=4; Tribolium castaneum|Rep: PREDICTED: similar to CG5002-PA - Tribolium castaneum Length = 999 Score = 30.7 bits (66), Expect = 8.9 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 3 ICPRKYFIKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNS 62 +C + +F K+ +NK PI WL T+ +DIL T G +I + G+ S Sbjct: 443 VC-QNFFRKETLNKRVPISSWLPKYTVSTLFQDIL-AGFTVGLTEIPQGIAFAGIAGL-S 499 Query: 63 IKKGTYCCIIG 73 + G YC +G Sbjct: 500 PEYGLYCGFMG 510 >UniRef50_UPI00006CBFC8 Cluster: Elongation factor Tu GTP binding domain containing protein; n=1; Tetrahymena thermophila SB210|Rep: Elongation factor Tu GTP binding domain containing protein - Tetrahymena thermophila SB210 Length = 581 Score = 30.7 bits (66), Expect = 8.9 Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 10 IKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVI 58 IKD+ K T I+V++ IE ++ +++ I FG++ K +GV+ Sbjct: 491 IKDMFKKETKIEVYVNKPIEISLTKNVGKIQGAFGKSGKVKAVFPNGVL 539 >UniRef50_UPI00005873EB Cluster: PREDICTED: similar to Chromosome 16 open reading frame 75; n=1; Strongylocentrotus purpuratus|Rep: PREDICTED: similar to Chromosome 16 open reading frame 75 - Strongylocentrotus purpuratus Length = 152 Score = 30.7 bits (66), Expect = 8.9 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 22 VWLQGTIEQT-VGRDILIISDTFGRAKITKCETAD-GVIDKNSIKKGTYCCIIGTAVKTK 79 VW++G + +I ++ D+ GRA+I + N I + ++G V Sbjct: 36 VWMEGRLVSVDEPENIAVLYDSTGRARIDYSSVRRLRSHNDNVIAVDSIVMVVGKVVSYP 95 Query: 80 GVPEVQAYKFIDLSSQPEMKSSWEIEVNE 108 P ++A K +SS + W++EV E Sbjct: 96 PDPLIKAIKISRVSSCESGEVIWDLEVRE 124 >UniRef50_Q4PD62 Cluster: Putative uncharacterized protein; n=1; Ustilago maydis|Rep: Putative uncharacterized protein - Ustilago maydis (Smut fungus) Length = 253 Score = 30.7 bits (66), Expect = 8.9 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 41 DTFGRAKIT-KCETADGVIDKNSIKKG-TYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEM 98 DT G ++ KC +G + +++ G TY + KG A+ I P Sbjct: 149 DTLGYRRVEWKCNNLNGPSKRAAVRYGFTYEGLFRKMFVLKGRNRDTAWFAIVDDDWPNR 208 Query: 99 KSSWEIEVNEANLFLEGKLIPNIEDCHK 126 K++ + ++E+N EGK I +++ H+ Sbjct: 209 KAAIQTWLDESNFDTEGKQILTLKEAHR 236 >UniRef50_P08724 Cluster: Balbiani ring protein 1; n=10; Chironomus|Rep: Balbiani ring protein 1 - Chironomus pallidivittatus (Midge) Length = 326 Score = 30.7 bits (66), Expect = 8.9 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 17 PTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIG--T 74 P P+ +E + G D L+ D R++ KC G D + K + G T Sbjct: 143 PEPVTEGPTTCVESSEGDDSLVCDDEMRRSEAEKCTKIGGKFDSETCKCTSEPVTEGPTT 202 Query: 75 AVKTKGVPEVQAYKFIDLSSQPEMK 99 +++ EV K D + PE K Sbjct: 203 CLESSESDEVTTKKPCDCTCAPECK 227 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.319 0.138 0.416 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 142,819,097 Number of Sequences: 1657284 Number of extensions: 5155920 Number of successful extensions: 10141 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 10130 Number of HSP's gapped (non-prelim): 22 length of query: 127 length of database: 575,637,011 effective HSP length: 91 effective length of query: 36 effective length of database: 424,824,167 effective search space: 15293670012 effective search space used: 15293670012 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 66 (30.7 bits)
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