GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
         (127 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   3.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   3.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   6.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   8.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    20   8.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    20   8.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 49  TKCETADGVIDKNSIKKGTYCCIIGTAV 76
           TKC+    VID    KK   C ++   V
Sbjct: 115 TKCQENSTVIDYKRHKKRLLCYLLARYV 142


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 49  TKCETADGVIDKNSIKKGTYCCIIGTAV 76
           TKC+    VID    KK   C ++   V
Sbjct: 133 TKCQENSTVIDYKRHKKRLLCYLLARYV 160


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 40  SDTFGRAKITKCETADGVIDKNSI---KKGTYCCIIGT---AVKTKGVPEVQAYKFIDLS 93
           S +F + K+T     +G I  NS+   K   +   +GT    V +   PE Q   FI ++
Sbjct: 126 SISFAKVKLTNKSNGNGQIMLNSLHKYKPTVHLVRVGTEPRRVISFPFPETQ---FIAVT 182

Query: 94  S-QPEMKSSWEIEVNE-ANLFLEGKLIPN 120
           + Q E  ++ +I+ N  A  FL+ K  P+
Sbjct: 183 AYQNEEVTALKIKYNPFAKAFLDAKERPD 211


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 111 LFLEGKLIPNIEDCHKL 127
           LF + KLI  I   HKL
Sbjct: 98  LFYQNKLIEVISKLHKL 114


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory
          receptor candidate 44 protein.
          Length = 313

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 48 ITKCETADGVIDKNSIKKGTYCCIIGTAVKT 78
          ITK  T  G++  +  KK    CII  A+ T
Sbjct: 18 ITKVLTILGLLSCSFPKKKLVYCIIFGAIAT 48


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory
          receptor candidate 4 protein.
          Length = 309

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 48 ITKCETADGVIDKNSIKKGTYCCIIGTAVKT 78
          ITK  T  G++  +  KK    CII  A+ T
Sbjct: 14 ITKVLTILGLLSCSFPKKKLVYCIIFGAIAT 44


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,473
Number of Sequences: 317
Number of extensions: 1122
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 127
length of database: 114,650
effective HSP length: 50
effective length of query: 77
effective length of database: 98,800
effective search space:  7607600
effective search space used:  7607600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)