GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   2.8  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   2.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   4.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   4.8  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   6.4  

>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 10  IKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYC 69
           + D ++  TP++ W   TIE+ V R + I   T           AD  I K + K+    
Sbjct: 191 VLDSLHLDTPLEKWDDDTIEKVVNRFVDIKFPTVIALNKIDHPDADANISKIARKEDPNR 250

Query: 70  CIIGTAV 76
            ++ +A+
Sbjct: 251 LVLASAI 257


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 84  VQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 120
           V+  K + +S+  E+KS   I  N + LFL G+ I N
Sbjct: 455 VRLRKCLKVSNTTELKSMKLINNNPSRLFLHGERIHN 491


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 40  SDTFGRAKITKCETADGVIDKNSIKKGTYCCIIG-TAVKTKGVPEVQAYKF 89
           S  F   +  KC+ A  + D   +KK  YC  +  T  +  G P +  Y F
Sbjct: 359 SGVFFEMQSVKCKVAQEIQDHGWLKKLIYCEEMDRTTPRNPGSPCISHYLF 409


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)

Query: 25   QGTIEQTVGRDILIIS------DTFGRAKITKCET 53
            Q  +E T+ RD+++        D F RA + KCET
Sbjct: 1135 QQKVEDTIPRDVVLEKKMALQRDAFIRALVVKCET 1169


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 85  QAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPNIE 122
           Q Y    L + P++ + +E E N    F++ +L  ++E
Sbjct: 463 QEYSIAGLGTNPQLDAVYERECNHFKKFVKNELKDSLE 500


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,630
Number of Sequences: 5004
Number of extensions: 22058
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)