GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0715 + 27083102-27083308,27083384-27083504,27084014-270840...    40   5e-04
08_01_0203 + 1639993-1641141                                           29   1.1  
02_01_0586 - 4334896-4335177,4336340-4338007                           28   2.0  
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556...    28   2.6  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    26   8.0  

>03_05_0715 +
           27083102-27083308,27083384-27083504,27084014-27084087,
           27085713-27085838
          Length = 175

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 22  VWLQGTIEQTVGRD---ILIISDTFGRAKITKC-ETADGVIDKNSIKKGTYCCIIGTAVK 77
           VWLQG +     RD    +++ D    A+IT   + A+G       ++G Y  ++G+   
Sbjct: 66  VWLQGVVVLADYRDGAGHILVDDGSCVAEITLTPKEAEG----QPWREGMYVMVLGSYSG 121

Query: 78  TKGVPE-----VQAYKFIDLSSQPEMKSSWEIEVNEA-NLF 112
            + +P      ++ +K +DLS+QP+ +S W +EV EA N F
Sbjct: 122 KESLPRANRPVIKVHKLVDLSAQPDRESMWYMEVVEAFNFF 162


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 59  DKNSIKKGTYCCI--IGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGK 116
           D++  +K    CI  + T+ K +GV E Q Y+ + LS    M   WEI   +   +    
Sbjct: 315 DQHHCQKLKEACIEFLATSKKMEGVMESQGYEKMKLSCPSFMVDLWEIIGRKMTSY---S 371

Query: 117 LIPNI 121
           +IPNI
Sbjct: 372 VIPNI 376


>02_01_0586 - 4334896-4335177,4336340-4338007
          Length = 649

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 38  IISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKF 89
           IISD    A   +    D   D ++   G +C ++G+ ++ +  PE+Q   F
Sbjct: 111 IISDRLAAASFVRAGDDD---DDDAPSSGPWCLVVGSKIRARVGPELQLKTF 159


>01_01_0717 -
           5559414-5559435,5559589-5559764,5559876-5559917,
           5560039-5560080,5560268-5560370,5560466-5560527,
           5561638-5561719,5567067-5567353,5568085-5568184,
           5568584-5568651,5569819-5569860,5570001-5570032,
           5572616-5572652
          Length = 364

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 79  KGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 120
           KG+ +++A K   L ++ E     E+E+   N++L  K++ N
Sbjct: 262 KGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVEN 303


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 37  LIISDTFGRAKITKCETAD 55
           L+ S+ F   K+TKC TAD
Sbjct: 625 LVSSEEFSTFKVTKCNTAD 643


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,566
Number of Sequences: 37544
Number of extensions: 130665
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 14,793,348
effective HSP length: 74
effective length of query: 53
effective length of database: 12,015,092
effective search space: 636799876
effective search space used: 636799876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)