Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
(127 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 28 2.7
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_4759| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_35391| Best HMM Match : rve (HMM E-Value=2.6e-14) 27 6.2
SB_32391| Best HMM Match : rve (HMM E-Value=4.9e-14) 27 6.2
SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15) 27 6.2
SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_1129| Best HMM Match : PAM2 (HMM E-Value=0.028) 27 6.2
SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10) 26 8.3
SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40) 26 8.3
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33) 26 8.3
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 31.1 bits (67), Expect = 0.29
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 9 FIKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRA-KITKCETADGVIDKNSIKKGT 67
F+ +I +P P WL+G T G I+SD G+ +IT C D +G
Sbjct: 4361 FVCRVIGRPDPTYEWLRGDKPITDGGRYTIMSDDEGQTLEITDCTVED---------EGL 4411
Query: 68 YCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANL 111
Y C+ + + G A ++ S +P K+ ++ + A++
Sbjct: 4412 YKCV---STNSSGTDTTTARLTVEASRRPISKNIEKLLIKAASM 4452
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 94 SQPEMKSSWEIEVNEANLFLEGKLIPNIED 123
++ E+ WE+ +NEA F E + + ED
Sbjct: 36 AEGEIPEHWEVLINEAKSFYEDEFVSTAED 65
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 61 NSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKL-IP 119
NS+K+ C + T TK + EVQ K I L P + + ++A + L + I
Sbjct: 473 NSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLLDSPGI--VMDTGDSDAAIILRNCVKIE 530
Query: 120 NIED 123
NIED
Sbjct: 531 NIED 534
>SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 94 SQPEMKSSWEIEVNEANLFLEGKLIPNIED 123
++ E+ WE+ +NEA F E + + ED
Sbjct: 79 AEGEIPEHWEVLINEAKSFYEDEFVSTAED 108
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 43 FGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSW 102
FG A + +C D V K G Y + +KTKG PE K ++ EM++
Sbjct: 178 FGLAPVQRCIYKDLVALLTPEKHGGY--LSSKELKTKGEPEFLQDKLLEGGQMGEMRNG- 234
Query: 103 EIEVNEANLF 112
I E +F
Sbjct: 235 -INYREVRIF 243
>SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 42 TFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSS 101
T GR K + + DGVI +N+ + ++ T +T P + + + E + S
Sbjct: 59 TEGRCKAERLQAGDGVIQENTERVQELQGVVATGRETIDDPNTSKSRRQEARDRNEERLS 118
Query: 102 WEIEVNEANLFLEGK 116
E+ N LE K
Sbjct: 119 EIDELERENRELENK 133
>SB_4759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 97 EMKSSWEIEVNEANLFLEGKLIPNIED 123
E+ WE+ +NEA F E + + ED
Sbjct: 89 EIPEHWEVLINEAKSFYEDEFVSTAED 115
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 177 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 217
>SB_35391| Best HMM Match : rve (HMM E-Value=2.6e-14)
Length = 235
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 125 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 165
>SB_32391| Best HMM Match : rve (HMM E-Value=4.9e-14)
Length = 569
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 515 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 555
>SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15)
Length = 341
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 166 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 206
>SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 532 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 572
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 1142 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 1182
>SB_1129| Best HMM Match : PAM2 (HMM E-Value=0.028)
Length = 235
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E+ VG +S GR+ + CE D ++D ++
Sbjct: 6 WWGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 46
>SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)
Length = 314
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E VG +S GR+ + CE D ++D ++
Sbjct: 125 WWGGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 165
>SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E VG +S GR+ + CE D ++D ++
Sbjct: 166 WWGGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 206
>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
Length = 440
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 66 GTYCCIIGTAVKTKGVPEVQ-AYKFIDLSSQPE 97
G++CCI+GT V VP ++ K ++L+ E
Sbjct: 387 GSFCCIVGTLVIALPVPILEMKMKLVNLNQGGE 419
>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
Length = 1485
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 23 WLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
W G E VG +S GR+ + CE D ++D ++
Sbjct: 1303 WWGGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETV 1343
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.138 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,317,463
Number of Sequences: 59808
Number of extensions: 159101
Number of successful extensions: 289
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 19
length of query: 127
length of database: 16,821,457
effective HSP length: 74
effective length of query: 53
effective length of database: 12,395,665
effective search space: 656970245
effective search space used: 656970245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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