GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
         (127 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039361-1|AAH39361.1|   84|Homo sapiens C16orf75 protein protein.     37   0.017
BC031016-1|AAH31016.1|  147|Homo sapiens chromosome 16 open read...    36   0.030
BC022427-1|AAH22427.1|  147|Homo sapiens chromosome 16 open read...    36   0.030
BC013040-1|AAH13040.2|  147|Homo sapiens chromosome 16 open read...    36   0.030
BC042592-1|AAH42592.1| 1124|Homo sapiens solute carrier family 9...    29   4.5  
AL139142-3|CAI20938.1| 1124|Homo sapiens solute carrier family 9...    29   4.5  

>BC039361-1|AAH39361.1|   84|Homo sapiens C16orf75 protein protein.
          Length = 84

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 64  KKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNE 108
           K G Y  ++G        P +QA K  DLS  P  +S WE+EV +
Sbjct: 34  KSGKYVMVMGVVQACSPEPCLQAVKMTDLSDNPIHESMWELEVED 78


>BC031016-1|AAH31016.1|  147|Homo sapiens chromosome 16 open reading
           frame 75 protein.
          Length = 147

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 22  VWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGV 81
           VW+QG +     R    + D  G   +   E       +  +  G Y  ++G        
Sbjct: 58  VWMQGRVVMA-DRGEARLRDPSGDFSVRGLERVPR--GRPCLVPGKYVMVMGVVQACSPE 114

Query: 82  PEVQAYKFIDLSSQPEMKSSWEIEVNE 108
           P +QA K  DLS  P  +S WE+EV +
Sbjct: 115 PCLQAVKMTDLSDNPIHESMWELEVED 141


>BC022427-1|AAH22427.1|  147|Homo sapiens chromosome 16 open reading
           frame 75 protein.
          Length = 147

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 22  VWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGV 81
           VW+QG +     R    + D  G   +   E       +  +  G Y  ++G        
Sbjct: 58  VWMQGRVVMA-DRGEARLRDPSGDFSVRGLERVPR--GRPCLVPGKYVMVMGVVQACSPE 114

Query: 82  PEVQAYKFIDLSSQPEMKSSWEIEVNE 108
           P +QA K  DLS  P  +S WE+EV +
Sbjct: 115 PCLQAVKMTDLSDNPIHESMWELEVED 141


>BC013040-1|AAH13040.2|  147|Homo sapiens chromosome 16 open reading
           frame 75 protein.
          Length = 147

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 22  VWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGV 81
           VW+QG +     R    + D  G   +   E       +  +  G Y  ++G        
Sbjct: 58  VWMQGRVVMA-DRGEARLRDPSGDFSVRGLERVPR--GRPCLVPGKYVMVMGVVQACSPE 114

Query: 82  PEVQAYKFIDLSSQPEMKSSWEIEVNE 108
           P +QA K  DLS  P  +S WE+EV +
Sbjct: 115 PCLQAVKMTDLSDNPIHESMWELEVED 141


>BC042592-1|AAH42592.1| 1124|Homo sapiens solute carrier family 9,
           member 11 protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 14  INKPTPIDVWLQGTIEQTVGRDILIISDTFG-RAKITKCETADGVIDKNSIKKGTYCCII 72
           I  PTP D++L   I    G+D+LI  D F  RAK+   ++ D +     + +G Y  I 
Sbjct: 854 IPPPTP-DIYLHNII-WLEGKDVLI--DFFKERAKLACFDSGDTICKGGEMPQGIYLIIS 909

Query: 73  GTAV 76
           G A+
Sbjct: 910 GMAI 913


>AL139142-3|CAI20938.1| 1124|Homo sapiens solute carrier family 9,
           member 11 protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 14  INKPTPIDVWLQGTIEQTVGRDILIISDTFG-RAKITKCETADGVIDKNSIKKGTYCCII 72
           I  PTP D++L   I    G+D+LI  D F  RAK+   ++ D +     + +G Y  I 
Sbjct: 854 IPPPTP-DIYLHNII-WLEGKDVLI--DFFKERAKLACFDSGDTICKGGEMPQGIYLIIS 909

Query: 73  GTAV 76
           G A+
Sbjct: 910 GMAI 913


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,957
Number of Sequences: 224733
Number of extensions: 686034
Number of successful extensions: 1383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 6
length of query: 127
length of database: 73,234,838
effective HSP length: 81
effective length of query: 46
effective length of database: 55,031,465
effective search space: 2531447390
effective search space used: 2531447390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)